PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.PEG2Q | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NF-YC | ||||||||
Protein Properties | Length: 84aa MW: 9857.29 Da PI: 9.1195 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 36.2 | 1.3e-11 | 2 | 77 | 24 | 99 |
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ri+ i+ka++ ++s ea ++ ka e f+ +++ ++++ + +r++l +a +v++ ++fl d vp+ Aradu.PEG2Q 2 NRIRTIVKAEDPDLRVSQEAIFVVNKAAEKFLEQFAQDGYVRCVQERRKSLSYKHLAHVVSKQRRYEFLSDFVPET 77 7*******98777789*********************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 1.1E-13 | 1 | 61 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 6.2E-22 | 1 | 76 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.61E-16 | 9 | 77 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MNRIRTIVKA EDPDLRVSQE AIFVVNKAAE KFLEQFAQDG YVRCVQERRK SLSYKHLAHV 60 VSKQRRYEFL SDFVPETLKA EDAL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.PEG2Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015952380.1 | 3e-57 | ribosomal RNA-processing protein 8 isoform X1 | ||||
TrEMBL | A0A445A9W0 | 1e-55 | A0A445A9W0_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA11G20740.1 | 5e-40 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 3e-26 | nuclear factor Y, subunit C10 |