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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.JV7AK | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 451aa MW: 50906.7 Da PI: 5.0851 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.9 | 8.9e-32 | 78 | 215 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd..iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...sgyWkatgk 88 lp+G++F+P+d+e++++ L k g+ ++++ + evd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + +W++tg+ Aradu.JV7AK 78 LPKGVKFDPSDQEIIWHLLVKAGVGNLkphpfIDEFITTLEVDdgICYTHPQHLP-GVKQDGRASHFFHRAIKAYNTGTRKRRKVHgqdDVRWHKTGR 174 799************999988754444466554444444444345**********.778889999******************866455889****** PP NAM 89 dkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +k ++ +g +g+kk++v+y++ r k++kt+Wvmh+y+l Aradu.JV7AK 175 TKLITL-NGVPKGCKKIMVLYTNavRGGKSVKTNWVMHQYHL 215 ******.99************5434888889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-37 | 69 | 234 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.245 | 78 | 234 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-13 | 79 | 215 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MAGASWLVDK SRIATKIKSA SGACDPNEVI WKTNPTRICP NCHHPIDNSD KIAYYQFKRW 60 FKGPVLLDIH VTQEWPGLPK GVKFDPSDQE IIWHLLVKAG VGNLKPHPFI DEFITTLEVD 120 DGICYTHPQH LPGVKQDGRA SHFFHRAIKA YNTGTRKRRK VHGQDDVRWH KTGRTKLITL 180 NGVPKGCKKI MVLYTNAVRG GKSVKTNWVM HQYHLGTEED EKEGAYVISK VFYKDDQDIP 240 EAAESKNATV AKVDPVTPKS TTPEPPRNER QDSDLGLDLD LGQEALAFTE MDCLDEIQAD 300 CEESAKANPP VLETQENEGM DNKETNAYEA QPWWDSDSQN LLDSQQLVEA LTLCEDIFHS 360 QSSNKDDEND KNQTGLSVYA HLGPEHLKKD IEECQKLAPA GPEHQKDIED GQNLDIDLAN 420 IERDTPPEHR LSQLEFGSQD SYTYWGFQGV N |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.JV7AK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015967598.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-149 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A445CZY4 | 0.0 | A0A445CZY4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G22510.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-150 | NAC family protein |