PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.H2IIR

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

SBP

Protein Properties

Length: 1007aa MW: 110877 Da PI: 6.3783

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.H2IIR	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.6	2.7e-41	149	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska+++lv + +qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++ Aradu.H2IIR 149 VCQVEDCGADLSSAKDYHRRHKVCEMHSKATKALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNN 226 6**************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.1E-33	143	211	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.129	147	224	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.79E-38	148	228	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.9E-30	150	223	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	7.46E-7	779	891	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.79E-7	781	892	No hit	No description
Gene3D	G3DSA:1.25.40.20	9.3E-7	781	895	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1007 aa Download sequence Send to blast
MEARFGTEAL QFYAMGGSSV GKRSMEWDLN DWKWDGDLFI ARPLNPGPEH RQFFPAGTRI 60 PVAGGPSNSN SSSSCSDEVD LGIRGGNKEG DKKRRVVVLE DDALNEESGT LSLKLGGGVG 120 GHGGAQIGSW EGVNGKKSRV AGGNSNRAVC QVEDCGADLS SAKDYHRRHK VCEMHSKATK 180 ALVGNAMQRF CQQCSRFHML QEFDEGKRSC RRRLAGHNKR RRKTNNDAVP NATSLNDDQT 240 SSYLLISLLK ILSNMHSDRS DQTTDQDLLT HLLRSLASQN GDQGGKNLSN LLAQPENLLK 300 EGSSSGKSEM VSTLFSNGSQ GSPSVIQQHQ AISVAELQHQ VMHAHDIMPT DQQIMSSTKP 360 SASNSPPTYS EARDSTAGQT KINNFDLNDI YIDSDDGIED IEKLPVSANL GTSSLEYPWT 420 QHDSHQSSPP QTSGNSDSAS AQSPSSSSGE AQSRTDRIVF KLFGKEPNDF PLVLRAQILD 480 WLSHSPTDME SYIRPGCIVL TIYLRQSEAM WEELCYDLTS SLSRLLDVSD VDFWRTGWVH 540 IRVQHQLAFV FNGQVVIDTS LPFRSNNYGK ILSVSPIAVP ASKTAHFSVK GINLNRPATR 600 LLCALEGNYL SCEDAHESMD QGSKELEELQ CIQFSCSVPV INGRGFIEIE DQGLSSSYFP 660 FIVAEEDVCS EICVLEPLIE VSDIDPDNEG TGKIKAKNQA MDFIHEMGWL LHRSQLRSRM 720 VHLNSSVELF PLKRFKWLME FSVDRDWCAV VKKLLNLLLS GTVGTGDHQS LHLALSEMGL 780 LHKAVRRNSR QLVELLLRYV PENISDKLGH EDMALVGGEN QSFLFRPDAA GPAGLTPLHI 840 AAGKDGSEEV LDALTNDPCM VGIEAWKSAR DSTGSTPEDY ARLRGHYAYI HLVQKKINKR 900 QGGAHVVVDI PSNLTGFNTN QKQNETTSFD IVGKAEGRSA QKQCKLCDNK LSCRAVVGKS 960 LAYRPAMLSM VAIAAVCVCV ALLFKSSPEV LYVFRPFRWE SLEYGTS

Sequence ? help Back to Top

Protein Sequence Length: 1007 aa Download sequence Send to blast

MEARFGTEAL QFYAMGGSSV GKRSMEWDLN DWKWDGDLFI ARPLNPGPEH RQFFPAGTRI  60
PVAGGPSNSN SSSSCSDEVD LGIRGGNKEG DKKRRVVVLE DDALNEESGT LSLKLGGGVG  120
GHGGAQIGSW EGVNGKKSRV AGGNSNRAVC QVEDCGADLS SAKDYHRRHK VCEMHSKATK  180
ALVGNAMQRF CQQCSRFHML QEFDEGKRSC RRRLAGHNKR RRKTNNDAVP NATSLNDDQT  240
SSYLLISLLK ILSNMHSDRS DQTTDQDLLT HLLRSLASQN GDQGGKNLSN LLAQPENLLK  300
EGSSSGKSEM VSTLFSNGSQ GSPSVIQQHQ AISVAELQHQ VMHAHDIMPT DQQIMSSTKP  360
SASNSPPTYS EARDSTAGQT KINNFDLNDI YIDSDDGIED IEKLPVSANL GTSSLEYPWT  420
QHDSHQSSPP QTSGNSDSAS AQSPSSSSGE AQSRTDRIVF KLFGKEPNDF PLVLRAQILD  480
WLSHSPTDME SYIRPGCIVL TIYLRQSEAM WEELCYDLTS SLSRLLDVSD VDFWRTGWVH  540
IRVQHQLAFV FNGQVVIDTS LPFRSNNYGK ILSVSPIAVP ASKTAHFSVK GINLNRPATR  600
LLCALEGNYL SCEDAHESMD QGSKELEELQ CIQFSCSVPV INGRGFIEIE DQGLSSSYFP  660
FIVAEEDVCS EICVLEPLIE VSDIDPDNEG TGKIKAKNQA MDFIHEMGWL LHRSQLRSRM  720
VHLNSSVELF PLKRFKWLME FSVDRDWCAV VKKLLNLLLS GTVGTGDHQS LHLALSEMGL  780
LHKAVRRNSR QLVELLLRYV PENISDKLGH EDMALVGGEN QSFLFRPDAA GPAGLTPLHI  840
AAGKDGSEEV LDALTNDPCM VGIEAWKSAR DSTGSTPEDY ARLRGHYAYI HLVQKKINKR  900
QGGAHVVVDI PSNLTGFNTN QKQNETTSFD IVGKAEGRSA QKQCKLCDNK LSCRAVVGKS  960
LAYRPAMLSM VAIAAVCVCV ALLFKSSPEV LYVFRPFRWE SLEYGTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	141	223	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.H2IIR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF312231	0.0	KF312231.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015968830.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_015968831.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A445CMW3	0.0	A0A445CMW3_ARAHY; Uncharacterized protein
STRING	GLYMA02G01160.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]