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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.GI8Z2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 542aa MW: 58384.5 Da PI: 7.2872 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.1e-30 | 300 | 358 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Aradu.GI8Z2 300 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGTHNHP 358 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-33 | 284 | 360 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.8E-28 | 292 | 360 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.562 | 294 | 360 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-36 | 299 | 359 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 301 | 358 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MDTAGWALTL DSSSSFSSSK SSAIRHSNKS HVSTMFPTLG GFSATDPSMS SDHNNRAVVG 60 EVDFFNTSSS SSVKNQTCTH GSLSEFNLHV NTGLQLLTAN SKSDQSTVDD GVSSDTEDKR 120 PKTTQLVQVQ EELQRVNSEN QKLKETLNHM RSSYMNLQMQ VAALMQHQQK QQVSETTTEN 180 HEVGKVKGDD EKKEGRSSGG GGMIPRQLLD LVASGTAEVD DQVSNSSSEE RTRSSTPQNH 240 KNSNGKMENT GEDLESSQQG WDNPNKFQRL NPATDQSTAE ATMRKARVSV RARSEAPMIS 300 DGCQWRKYGQ KMAKGNPCPR AYYRCTMAVG CPVRKQVQRC AEDRTILITT YEGTHNHPLP 360 PAAMAMASTT AAAASMLLSG SMSSADGIMN SSMMARAILP SSSMATLSAS APFPTVTLDL 420 THQPNALPLQ YHQRQQQQHP HAQLPQVIAQ ALYNQSKFSG LQLSQDVGSS QASRLPSLHP 480 NQNNPLLADK VNAITNDPNF TAVVAAAISS IIGGAHQNNN ANNSDANPNI INSATVGSFS 540 GN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-22 | 286 | 362 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.GI8Z2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015940961.1 | 0.0 | WRKY transcription factor 6 isoform X1 | ||||
Swissprot | Q9C519 | 1e-136 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A445ELF6 | 0.0 | A0A445ELF6_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA09G00820.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-104 | WRKY family protein |