PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.6I1RF
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 500aa    MW: 57214.6 Da    PI: 6.8796
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.6I1RFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.5e-0784106326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  +++C ff+  G+C+ GdrC+F Hg
  Aradu.6I1RF  84 MVPCYFFFN-GYCNKGDRCSFLHG 106
                  689******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.277635IPR000571Zinc finger, CCCH-type
SMARTSM003560.0064734IPR000571Zinc finger, CCCH-type
PfamPF156633.1E-11863No hitNo description
PROSITE profilePS5010310.3713763IPR000571Zinc finger, CCCH-type
SMARTSM003560.63962IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-481107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.04781108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-681106IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-584106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-686109IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MDEASLMRNT DCVYFLASPL TCKKGAECEY RHNEIARLNP RDCWYWLSGS CLNPTCAFRH  60
PPLDGQTGVS SEPTQSAVPA NKTMVPCYFF FNGYCNKGDR CSFLHGHDES HFTVKPVKND  120
KGGTDPPNLE NKVLSGTAPS TTETHSNPSL TAPKALPTFK PPPKEDLQLS LPKNVKQQEE  180
RFVDNISQRC SEQGSEEQVN GHIEPDERWE SSSPGFDVLV HDESANLGYE EDPEYLPDGE  240
HEELNEQYLG YEFENPVEYD NMCRKADILY EQEMYDDYRR LDRDLTRANG RRVCDCSSDI  300
ILDSMLTRKR IQLSDIATCD GKLDLRDHLR RRRESSGPPD ASFIRRHESS SLMVRNRERH  360
QRHYNEQRLR GRLSSQVGIT TIDPIGEVET LSIANKPRLS RNSQQHWPRK HYREKPSKRQ  420
FHSSNDSRRP VFKQRRFVHE SSTFSGPKSL AEIREEKKKA AGSFHCKSTS PDFQDPKPLS  480
EILKGKRSVD GVGDVNVCSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.6I1RF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015944703.20.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 32-like
TrEMBLA0A445EKJ90.0A0A445EKJ9_ARAHY; Uncharacterized protein
STRINGGLYMA05G08496.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-06C3H family protein