PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.03UN2
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 272aa    MW: 31125.1 Da    PI: 10.7568
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.03UN2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.41.5e-1958417100
                  E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
           B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                  ++pk f +++ +g+   +++  l d +g+sW+v+l  +k +++  vl++GWk+Fv+++ L++ Df+vF++dg+s+f  +vk+f+ks
  Aradu.03UN2   5 RIPKAFSAKFlNGN--IGRKTALVDHEGNSWDVEL--KKMDDGlLVLKNGWKKFVRDKCLEQADFLVFEYDGNSKF--HVKIFSKS 84 
                  69****98987555..6778999************..8888888****************************9999..*****985 PP
2B345.61.3e-14182271998
                  HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE- CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfr 98 
                  ++ + + + +p++ ++e +++ ++   ++l+de+ + W vk+  ++ +gr++++kGW++F ka+ ++eg  + Fk++  ++ + +el+v+v++
  Aradu.03UN2 182 SHWRMRKMEIPRRVTKELNISLKS--GIMLRDEDDKLWPVKI-LTGDRGRCYFAKGWSSFWKAKSVEEGNLCDFKFVvgKEnRAEELLVRVRS 271
                  444556799******999666334..5***************.7999999*************************554344577888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.636184IPR003340B3 DNA binding domain
SMARTSM010193.5E-12384IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-21586IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-17583IPR003340B3 DNA binding domain
CDDcd100171.70E-19582No hitNo description
SuperFamilySSF1019362.55E-21589IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-17172255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-16173257IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.674174272IPR003340B3 DNA binding domain
CDDcd100174.06E-10175271No hitNo description
SMARTSM010195.5E-7177263IPR003340B3 DNA binding domain
PfamPF023621.9E-12179271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSFNRIPKAF SAKFLNGNIG RKTALVDHEG NSWDVELKKM DDGLLVLKNG WKKFVRDKCL  60
EQADFLVFEY DGNSKFHVKI FSKSGCRKEA AISGKLNPVM ISDNEDSDLQ NSKRKHERGV  120
KRKLSPITPL KLNQKSHSKK GTTVRKSKRV KNGANGSNCE SKASGLVKFV PLKNPHFVTP  180
MSHWRMRKME IPRRVTKELN ISLKSGIMLR DEDDKLWPVK ILTGDRGRCY FAKGWSSFWK  240
AKSVEEGNLC DFKFVVGKEN RAEELLVRVR SH
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.03UN2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025603569.10.0putative B3 domain-containing protein At5g66980
TrEMBLA0A445CNW50.0A0A445CNW5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.16e-34B3 family protein