PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

Ahy015806

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 355aa MW: 39071.1 Da PI: 6.9111

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59552845	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	278	300	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Ahy015806 278 FMCRKCGKAFAVRGDWRTHEKNC 300 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.36E-5	190	216	No hit	No description
PROSITE profile	PS50157	9.64	194	221	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.3E-6	194	213	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.58	194	216	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	196	216	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.61E-6	259	298	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.5E-6	265	298	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	278	298	IPR007087	Zinc finger, C2H2
SMART	SM00355	49	278	298	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
XFIHPSMANN NSSYSNLFFS SSSSSSSSSF SSPPTPAPPP FFQFNHRYFP YYYHHHHTTT 60 ASAPFSYSSS STTSPPSPPL REELPLLTLS PARPDTNHHP SCSTTSMDFD EEDDADADDA 120 DADATDAADA TTVTVALTXX PSPSAAEMAS VLSEKEHGGG GEDSGGGGST GNKVNKGQYW 180 IPTPSQILIG PTQFSCPVCC KTFNRYNNMQ MHMWGHGSQY RKGPESLRGT QPTGMLRLPC 240 YCCAPGCRNN IDHPRSKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC 300 GKLWYCICGS DFKHKRSLKD HIKAFGSGHA AYGIDGFEED DDPASEVEQD HESTX

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

XFIHPSMANN NSSYSNLFFS SSSSSSSSSF SSPPTPAPPP FFQFNHRYFP YYYHHHHTTT  60
ASAPFSYSSS STTSPPSPPL REELPLLTLS PARPDTNHHP SCSTTSMDFD EEDDADADDA  120
DADATDAADA TTVTVALTXX PSPSAAEMAS VLSEKEHGGG GEDSGGGGST GNKVNKGQYW  180
IPTPSQILIG PTQFSCPVCC KTFNRYNNMQ MHMWGHGSQY RKGPESLRGT QPTGMLRLPC  240
YCCAPGCRNN IDHPRSKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC  300
GKLWYCICGS DFKHKRSLKD HIKAFGSGHA AYGIDGFEED DDPASEVEQD HESTX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016207458.1	1e-175	zinc finger protein WIP2
Refseq	XP_025663020.1	1e-175	zinc finger protein WIP2
Swissprot	Q9SVY1	1e-136	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A444YHE6	1e-174	A0A444YHE6_ARAHY; Uncharacterized protein
STRING	GLYMA03G29610.2	1e-160	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-126	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]