PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco029012.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C3H

Protein Properties

Length: 104aa MW: 11207.9 Da PI: 6.489

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco029012.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.8	6.4e-12	25	46	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++a++G+Ck+G++CkF H+ Aco029012.1 25 PCTYYAQNGFCKFGPTCKFDHP 46 8********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.061	20	48	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-5	20	47	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-7	21	49	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.5E-6	24	45	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-9	24	46	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MAMFHSDMAI RLELDYIQII LGAQPCTYYA QNGFCKFGPT CKFDHPIGTM SYSPSASSLS 60 EMPIAPFPLG FSLTTLPPTS SSSSEFVKES IPTQKILSKN SSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020103473.1	4e-49	zinc finger CCCH domain-containing protein 6-like
Swissprot	Q5NAV3	1e-24	C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBL	A0A199VKH1	9e-48	A0A199VKH1_ANACO; Zinc finger CCCH domain-containing protein 6
TrEMBL	A0A199VKP5	1e-47	A0A199VKP5_ANACO; Zinc finger CCCH domain-containing protein 6
STRING	cassava4.1_024226m	1e-23	(Manihot esculenta)
STRING	OPUNC01G09770.1	3e-23	(Oryza punctata)
STRING	XP_010112757.1	2e-23	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2761	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	5e-19	C3H family protein

Link Out ? help Back to Top
Phytozome	Aco029012.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]