PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco027180.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 361aa    MW: 39534.1 Da    PI: 5.6553
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco027180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
      Aco027180.1 14 KGLWSPEEDEKLLKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding52.98.3e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eE+ l++d+++ lG++ W+ Ia++++ gRt++++k++w++
      Aco027180.1  67 RGSFSQEEESLIIDLHAILGNR-WSQIAAKLP-GRTDNEIKNFWNS 110
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-27664IPR009057Homeodomain-like
PROSITE profilePS5129419.174961IPR017930Myb domain
SuperFamilySSF466891.8E-2912108IPR009057Homeodomain-like
SMARTSM007172.1E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-151461IPR001005SANT/Myb domain
CDDcd001674.40E-121761No hitNo description
PROSITE profilePS5129425.79262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2665116IPR009057Homeodomain-like
SMARTSM007174.3E-1666114IPR001005SANT/Myb domain
PfamPF002495.8E-1567111IPR001005SANT/Myb domain
CDDcd001671.77E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGKRSCCYMQ KLRKGLWSPE EDEKLLKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SQEEESLIID LHAILGNRWS QIAAKLPGRT DNEIKNFWNS CLKKRLRERG  120
IDPSTHKPLA DIELGGGGGG GGGEEPASTE KIASTSSDPI QIVSETGLLP LIQTPASENN  180
SISPTKCFFP RLRNSSAYNP HCSCPENNRN FPPPPLFDQC CCSSAIPSTM SDHRAPPPPN  240
HKHFQGLQCL DGELNLSTDS ATSENNSGGF PWSEILLSSK DGEVNIGGDL EDQKWSEYVN  300
GNFPIMPVRA IMDSESQDAF YADVKDEGGG GGGGQFSDNE LSTWAQNLQL QSSDLYGNDI  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020082223.10.0transcription factor MYB29-like
TrEMBLA0A199UXE70.0A0A199UXE7_ANACO; Transcription factor MYB86
STRINGGSMUA_Achr5P18400_0013e-97(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.38e-84myb domain protein 55