PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco026785.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 358aa MW: 38251.7 Da PI: 9.0577 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 52 | 102 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +gr++AeIrdp + r +lg+f+tae+Aa a++ a+++++g Aco026785.1 52 TKYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEQAACAYDIAARAMRG 102 69********.**********93....35999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.0E-11 | 52 | 102 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.94E-29 | 52 | 112 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-22 | 53 | 111 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-30 | 53 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.064 | 53 | 110 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.2E-34 | 53 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-9 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-9 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0010084 | Biological Process | specification of organ axis polarity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MEDTSNAAAH HQYHQQKRCG GNSGRRAGAG AGAGAGVGAG AGAAQREGGG GTKYRGVRRR 60 PWGRYAAEIR DPQSKERRWL GTFDTAEQAA CAYDIAARAM RGLKARTNFP IAHPAAAFPV 120 DPPNTGRGRP TRPSILSIII PTTTTTTTTT TTTATTITST LLIITTSACP CSPPPPPPPV 180 NRRVSFRGTS STRTTAAHPA PTTLSTSRLT TPSTTAALLA LLISRLFDGN SNTTTVSISN 240 NDNNSDDWDL FCSEPADAGL LQEIIHGFCP HRRHRRNDKS KEMAGRIDAA GKFHADEMMT 300 IEHGDRRGLV SLKSEVETFD VDTSADGPDN FPMVPQGLLE DIVQYPDFFE ILSAKLR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-20 | 33 | 110 | 4 | 72 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954877 | 3e-49 | EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020082642.1 | 6e-78 | uncharacterized protein LOC109706269 | ||||
Refseq | XP_020112149.1 | 5e-78 | uncharacterized protein LOC109726767 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7263 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 3e-31 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | Aco026785.1 |