PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco017940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 25636.7 Da PI: 9.5863 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 4e-18 | 69 | 122 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +gr++AeIrdp+ +g r++lg+f++a Aa+a+++a+ +++g+ Aco017940.1 69 RYRGVRRRP-WGRFAAEIRDPRRRGGGSRVWLGTFDSAVAAARAYDRAAFAMRGA 122 6********.**********9885546*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.8E-32 | 69 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-20 | 69 | 130 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.41E-15 | 69 | 130 | No hit | No description |
PROSITE profile | PS51032 | 23.657 | 69 | 129 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-29 | 69 | 130 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-13 | 69 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-13 | 70 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-13 | 111 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MALDSTLARI REHLLGGGDS ASSHLVQPPE PHPQTLNLTL AEPYDADNSA YLGSVDGGGA 60 GDGWRRGERY RGVRRRPWGR FAAEIRDPRR RGGGSRVWLG TFDSAVAAAR AYDRAAFAMR 120 GAKAILNFPN EIGCGTLNLH RRSIPPPPPH RTAGKRRRGR VGEGEAMMIT ATTTTTTTTR 180 ERVEGIEYGE GNIPLECELT PSSRRSGCDG EVADVERIFE APSPLSPRPP LHFSSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-26 | 55 | 136 | 1 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020096569.1 | 1e-170 | ethylene-responsive transcription factor ERF105-like | ||||
TrEMBL | A0A199UFV4 | 1e-169 | A0A199UFV4_ANACO; Ethylene-responsive transcription factor ERF105 | ||||
STRING | XP_010275423.1 | 2e-37 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 1e-10 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Aco017940.1 |