PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco017923.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB_related

Protein Properties

Length: 1246aa MW: 138340 Da PI: 9.8314

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco017923.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.3	7.3e-08	84	119	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+ eE e++++ ++ G++ W+++a+t+ +Rt +++ Aco017923.1 84 QWSREELERFYESYRKCGKD-WRKVAATIR-NRTSEMV 119 6***************99.*****.*9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.58E-9	79	130	IPR009057	Homeodomain-like
SMART	SM00717	0.0052	81	129	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-4	84	121	IPR009057	Homeodomain-like
Pfam	PF00249	8.8E-6	84	121	IPR001005	SANT/Myb domain
CDD	cd00167	2.34E-4	85	127	No hit	No description
SMART	SM01135	6.0E-56	693	794	IPR033471	DIRP domain
Pfam	PF06584	8.6E-33	693	793	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1246 aa Download sequence Send to blast
MEFGKSVKLK HPLLSGSSIR QIPPRSCSST SPSSPEFSMA STRKSRNANK RFAKVNEEWA 60 EKDATPLNKN RNRKRKISDM LGSQWSREEL ERFYESYRKC GKDWRKVAAT IRNRTSEMVE 120 ALFNMNKAYL SLPEGTATAA GLIAMMTDHY NMLEGSNSDR ESNDVPKSSR KPQKQSRGKY 180 RLMSKTPDAR YPDLLQYQSA SSSYGCLSLL KKKRSGGNRP RAVGKRTPRV LISSMYNRDD 240 KDKIGPLGRN VKPEVNAGDD EGLHVAALAL AEASQRGGSP EVSRTPGRRV DRIGSTPVKS 300 ERKNAESEMD SSKLLGIQTD GECPEGSLGS REAENGDDAK EVSCMMDNEG VRPAKTQQKL 360 KRSQRKKPKA KNRDNDQFDD DREACSGTEE GRNSRKVKDE TDMEVMDGKA ARGSKASKNR 420 SRQLFFGDES PGFDALQTLA DLSVNILLPS SAVDSESSAQ LKEEKKDMNS GEKLNVLESK 480 PRDKLKTSPK KDKKRSASIG ADSATQKNSK LVKGLQHDVN TVSETQQQSC ACSSKTEKRK 540 RKPSAKKVSK AELNSETPKE PETAEVSVEE GRKSSSKVRR AGQASPAQKQ GKVIKPQEIS 600 LSNVVDLGRT AGDVSQTNAQ VATENQGNVL ITSRKRRKMG LIKALAWKSN ESNGDHRPEK 660 FFYPGNGATV VKEKLSHCLS SRLLRRWCVF EWFYSAIDYP WFAKSEFVEY LNHVRLGHVP 720 RLTRAEWGVI RSSLGKPRRL SKKFLQEERE KLQRYRDSVR VHYAELRAGV REGLPNDLAR 780 PLSVGQRVIA CHPKTREIHD GSVLTVDRNR CRVQFDRPEL GVEFVMDIDC MPLNPLENFP 840 EALRRQNMVA GKYCNSFLDV KFEDQSKEWK VGSVPKFALS KNYESIDGTS HVASSTHPMS 900 ILMKQAEGNN IDSIVQAKLA VSEVTVAAQQ AMYSQPCTLS QIQEREADIR ALAELSRALD 960 KKEALLIELR HMNEEVSGKQ KDGDTIKDSD HFKKQYAMVL VQLRDANDQV SSALLSLRQR 1020 NTYHGSSSHP WTRPVENSGA FAGPPDSYNP SYFLNQDSGS QVMEIVDTSR QRAKMMVDVA 1080 LQAMCSLKEG EDAYIKIGEA LSFLNINNSG SFSTIPGIRR IPVDSGHANS GYQDNMFDTV 1140 AARAQSPKSH RGLDAEAPIP SELISSCVAI MLMIQACTER QYPPAEVAQI LDSAVASLQP 1200 CCPGNLPIFR EIETFMGVIK NQMLALIPTP ATATPGSEAS ILKSS*

Sequence ? help Back to Top

Protein Sequence Length: 1246 aa Download sequence Send to blast

MEFGKSVKLK HPLLSGSSIR QIPPRSCSST SPSSPEFSMA STRKSRNANK RFAKVNEEWA  60
EKDATPLNKN RNRKRKISDM LGSQWSREEL ERFYESYRKC GKDWRKVAAT IRNRTSEMVE  120
ALFNMNKAYL SLPEGTATAA GLIAMMTDHY NMLEGSNSDR ESNDVPKSSR KPQKQSRGKY  180
RLMSKTPDAR YPDLLQYQSA SSSYGCLSLL KKKRSGGNRP RAVGKRTPRV LISSMYNRDD  240
KDKIGPLGRN VKPEVNAGDD EGLHVAALAL AEASQRGGSP EVSRTPGRRV DRIGSTPVKS  300
ERKNAESEMD SSKLLGIQTD GECPEGSLGS REAENGDDAK EVSCMMDNEG VRPAKTQQKL  360
KRSQRKKPKA KNRDNDQFDD DREACSGTEE GRNSRKVKDE TDMEVMDGKA ARGSKASKNR  420
SRQLFFGDES PGFDALQTLA DLSVNILLPS SAVDSESSAQ LKEEKKDMNS GEKLNVLESK  480
PRDKLKTSPK KDKKRSASIG ADSATQKNSK LVKGLQHDVN TVSETQQQSC ACSSKTEKRK  540
RKPSAKKVSK AELNSETPKE PETAEVSVEE GRKSSSKVRR AGQASPAQKQ GKVIKPQEIS  600
LSNVVDLGRT AGDVSQTNAQ VATENQGNVL ITSRKRRKMG LIKALAWKSN ESNGDHRPEK  660
FFYPGNGATV VKEKLSHCLS SRLLRRWCVF EWFYSAIDYP WFAKSEFVEY LNHVRLGHVP  720
RLTRAEWGVI RSSLGKPRRL SKKFLQEERE KLQRYRDSVR VHYAELRAGV REGLPNDLAR  780
PLSVGQRVIA CHPKTREIHD GSVLTVDRNR CRVQFDRPEL GVEFVMDIDC MPLNPLENFP  840
EALRRQNMVA GKYCNSFLDV KFEDQSKEWK VGSVPKFALS KNYESIDGTS HVASSTHPMS  900
ILMKQAEGNN IDSIVQAKLA VSEVTVAAQQ AMYSQPCTLS QIQEREADIR ALAELSRALD  960
KKEALLIELR HMNEEVSGKQ KDGDTIKDSD HFKKQYAMVL VQLRDANDQV SSALLSLRQR  1020
NTYHGSSSHP WTRPVENSGA FAGPPDSYNP SYFLNQDSGS QVMEIVDTSR QRAKMMVDVA  1080
LQAMCSLKEG EDAYIKIGEA LSFLNINNSG SFSTIPGIRR IPVDSGHANS GYQDNMFDTV  1140
AARAQSPKSH RGLDAEAPIP SELISSCVAI MLMIQACTER QYPPAEVAQI LDSAVASLQP  1200
CCPGNLPIFR EIETFMGVIK NQMLALIPTP ATATPGSEAS ILKSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM665739	1e-155	KM665739.1 Ananas bracteatus clone 50920 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020105525.1	0.0	protein ALWAYS EARLY 2 isoform X3
TrEMBL	A0A199W0H9	0.0	A0A199W0H9_ANACO; Protein ALWAYS EARLY 3
STRING	XP_008806732.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6230	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Aco017923.1