PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco015104.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

M-type_MADS

Protein Properties

Length: 253aa MW: 27924.9 Da PI: 9.0267

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco015104.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.2	2.5e-24	95	144	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ r+v fskRr g++KKA+EL vLCdaev +i+fs gklyeyss Aco015104.1 95 RIEDRASRHVRFSKRRSGLFKKAFELAVLCDAEVGLIVFSAGGKLYEYSS 144 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.0E-33	86	145	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.623	86	146	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.91E-33	87	158	No hit	No description
SuperFamily	SSF55455	4.84E-29	88	167	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-26	88	108	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-23	95	142	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-26	108	123	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-26	123	144	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MGLHVNSFKE RLRCSAENNI RQLCVLCGGR RGISRVGPRT QLPLASCDLA MATPPSSSSP 60 SSLLLLLLLF FFFLLISRVR GLGEMPRRGK VELRRIEDRA SRHVRFSKRR SGLFKKAFEL 120 AVLCDAEVGL IVFSAGGKLY EYSSSSSIQE TFGRYQQFMK AEREVNEGDV TADLDLNTIA 180 SGDDDSSSSN IKSKLMSIAQ WAFEGNIDQL DSNELGQLER ALIEAVRLTT SRKIAVKGGD 240 GENVATVERQ RE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	9e-16	88	175	2	88	Myocyte-specific enhancer factor 2A
3kov_B	9e-16	88	175	2	88	Myocyte-specific enhancer factor 2A
3kov_I	9e-16	88	175	2	88	Myocyte-specific enhancer factor 2A
3kov_J	9e-16	88	175	2	88	Myocyte-specific enhancer factor 2A
3p57_A	9e-16	88	175	2	88	Myocyte-specific enhancer factor 2A
3p57_B	9e-16	88	175	2	88	Myocyte-specific enhancer factor 2A
3p57_C	9e-16	88	175	2	88	Myocyte-specific enhancer factor 2A
3p57_D	9e-16	88	175	2	88	Myocyte-specific enhancer factor 2A
3p57_I	9e-16	88	175	2	88	Myocyte-specific enhancer factor 2A
3p57_J	9e-16	88	175	2	88	Myocyte-specific enhancer factor 2A
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269\|PubMed:17951465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020087029.1	1e-118	MADS-box transcription factor 51-like
Swissprot	Q9XJ61	2e-48	MAD51_ORYSJ; MADS-box transcription factor 51
STRING	Pavir.J02739.1.p	3e-49	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	2e-28	AGAMOUS-like 14

Link Out ? help Back to Top
Phytozome	Aco015104.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SL,Lee S,Kim HJ,Nam HG,An G OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465]