PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012858.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 299aa    MW: 32637.7 Da    PI: 5.4238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012858.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-20125175255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAa+a+++a+ k++g
  Aco012858.1 125 RYRGVRQRP-WGKFAAEIRDP---NrRGSRVWLGTFDTAVEAARAYDRAAFKMRG 175
                  7********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.43E-29125184No hitNo description
SuperFamilySSF541717.19E-23125184IPR016177DNA-binding domain
SMARTSM003806.2E-38125189IPR001471AP2/ERF domain
PfamPF008472.5E-14125175IPR001471AP2/ERF domain
PROSITE profilePS5103224.316125183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-32125184IPR001471AP2/ERF domain
PRINTSPR003677.7E-11126137IPR001471AP2/ERF domain
PRINTSPR003677.7E-11149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MAFVGDEASA LDLIREHLLG DSSSSLDVLL AQFDPLAAAA APPPQHPQPR RSAYLDLTKP  60
YRIGPEPSVS MIRFGGDDHS PSSSSSSDRR RSLTISLPPI HSIDWSPPPP PPPPSAAAER  120
DDGRRYRGVR QRPWGKFAAE IRDPNRRGSR VWLGTFDTAV EAARAYDRAA FKMRGCKAIL  180
NFPNEIGTSS APSLPLPLPP PPPPPPQHKR KRDDDDDDDE VEVEVVEVRP IKKERSPETE  240
EEGGALQPNI PLLGPLTPSN WTSVWDWDAP DVKSAFNLPP LSPLSPHPSL GFPQLTVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-28123189369ATERF1
3gcc_A9e-28123189369ATERF1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126121e-57CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083788.10.0ethylene-responsive transcription factor 5-like
TrEMBLA0A199UR061e-134A0A199UR06_ANACO; Ethylene-responsive transcription factor 5
STRINGXP_010275423.17e-74(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.15e-26ethylene responsive element binding factor 5