PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco010600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 25783.3 Da PI: 4.5574 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.5e-18 | 76 | 125 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr+++ +g+++AeIrd + ng +r++lg+f+t+e Aa a+++a+++ +g Aco010600.1 76 YIGVRRRP-WGKFAAEIRDSTRNG--ARVWLGTFDTEEAAALAYDQAALSVRG 125 89******.**********44465..***********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.3 | 75 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-31 | 75 | 139 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-28 | 75 | 134 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-13 | 75 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-9 | 76 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-21 | 76 | 134 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.96E-16 | 76 | 132 | No hit | No description |
PRINTS | PR00367 | 6.1E-9 | 99 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MDSPNSYFSS SSSSSSSSSD SSLFGEFFPF GPDDAEEMLS FGTLADTGEG APPDEAKKNG 60 AEEGVAAAAG RKERSYIGVR RRPWGKFAAE IRDSTRNGAR VWLGTFDTEE AAALAYDQAA 120 LSVRGAAAVL NFSEERVRES LEGLQWGEEE EGCSPVMVLK KRHSLRRSRG GGGGGGVGRK 180 RRRRVVVSHG EEDDQEIKEV VRVENVVVLE DLGVEYLEEI LRISEIANTT YYSSTEL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-25 | 64 | 135 | 7 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 181 | KKRHSLRRSRGGGGGGGVGRKRR |
2 | 178 | 182 | RKRRR |
3 | 179 | 184 | KRRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020091368.1 | 1e-169 | ethylene-responsive transcription factor 1B-like | ||||
TrEMBL | A0A199VZ22 | 1e-134 | A0A199VZ22_ANACO; Ethylene-responsive transcription factor 1B | ||||
STRING | XP_010527399.1 | 1e-55 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-26 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Aco010600.1 |