PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009947.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 285aa    MW: 31255.4 Da    PI: 7.7077
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009947.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-172270148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd+ l ++v+++G+g +W + +++ g++R++k+c++rw++yl
      Aco009947.1 22 RGPWSPEEDDALRNYVEKHGSGgSWISLPQKAGLKRCGKSCRLRWLNYL 70
                     89*********************************************97 PP
2Myb_DNA-binding45.81.4e-1477119246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd +++ + ++ G++ W+ Ia+ ++ gRt++++k++w++
      Aco009947.1  77 GGFTEEEDNIIYALYQKIGSR-WSVIASQLP-GRTDNDIKNYWNT 119
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7811770IPR017930Myb domain
SuperFamilySSF466897.49E-2919117IPR009057Homeodomain-like
SMARTSM007179.0E-122172IPR001005SANT/Myb domain
PfamPF002493.9E-162270IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-242377IPR009057Homeodomain-like
CDDcd001671.46E-82470No hitNo description
PROSITE profilePS5129421.80171125IPR017930Myb domain
SMARTSM007177.3E-1475123IPR001005SANT/Myb domain
PfamPF002492.8E-1377119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2578125IPR009057Homeodomain-like
CDDcd001671.30E-1079121No hitNo description
SuperFamilySSF1014473.14E-5173183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
RCVVIIITMG RAPCCDKANV KRGPWSPEED DALRNYVEKH GSGGSWISLP QKAGLKRCGK  60
SCRLRWLNYL RPDIKHGGFT EEEDNIIYAL YQKIGSRWSV IASQLPGRTD NDIKNYWNTK  120
LKKRMIMSQS NVPTTTAAAA ASHSVVRTAS TPPLIIPTVK MEGYNCDDFM APPPPPPPPP  180
PPPFPEAEVF LEHSGFNERV HKFAEEGSTT CSSNITVENS NINWCTSACG ESYINGFLAE  240
FGLGSPGELL GGYYANLEKK GEHDANFGPL GNMWVTGDTK PKAH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25221257108B-MYB
1gv2_A2e-25221254105MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-252012525128MYB TRANSFORMING PROTEIN
1mse_C2e-25221254105C-Myb DNA-Binding Domain
1msf_C2e-25221254105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097642.10.0transcription factor RAX2-like
TrEMBLA0A2H3Y6B98e-88A0A2H3Y6B9_PHODC; transcription factor RAX2-like
STRINGXP_008794081.11e-88(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-71myb domain protein 36