PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

ERF

Protein Properties

Length: 190aa MW: 20326.7 Da PI: 4.8869

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco006883.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.3	1e-14	50	99	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr ++ +g+++AeIrd +g r++lg+f +ae Aa a+++a+ + +g Aco006883.1 50 YIGVRKRP-SGKFAAEIRDS-ARG-GERVWLGTFESAEAAALAYDQAAYAVRG 99 89****.7*****2.233.4********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	20.811	49	107	IPR001471	AP2/ERF domain
SMART	SM00380	2.9E-28	49	113	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-20	50	109	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	8.6E-27	50	108	IPR001471	AP2/ERF domain
Pfam	PF00847	2.6E-10	50	99	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.6E-7	50	61	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.6E-7	73	89	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MDSSLLLLEG SLPFDVNDSE ETLLYDTLAE AATETVGGSR GRGRPSDRPY IGVRKRPSGK 60 FAAEIRDSAR GGERVWLGTF ESAEAAALAY DQAAYAVRGA AAVLNFPVER VKESLRWLEE 120 AAGGGDSDDG SPVVALKKRH LIRRRRGGTG GSKCKKGAGE GVKRNIFEFE DLGEEYLEEL 180 LSASELATC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	6e-24	50	109	15	74	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269\|PubMed:23057995, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269\|PubMed:28733419}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020113426.1	1e-132	ethylene-responsive transcription factor 1B-like
Swissprot	A0A3Q7I5Y9	6e-52	ERFC3_SOLLC; Ethylene-response factor C3
TrEMBL	A0A199VFG2	1e-130	A0A199VFG2_ANACO; Ethylene-responsive transcription factor 1B
STRING	XP_006406062.1	8e-51	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP277	37	249

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	4e-25	ethylene response factor 1

Link Out ? help Back to Top
Phytozome	Aco006883.1

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Pirrello J, et al. Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene. BMC Plant Biol., 2012. 12: p. 190 [PMID:23057995] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419]