PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003196.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 370aa    MW: 39426.6 Da    PI: 6.9405
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003196.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.8e-21142191255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae+Aa+a+++a+++++g
  Aco003196.1 142 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEGAARAYDEAALRFRG 191
                  7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-22142200IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.9E-33142200IPR001471AP2/ERF domain
SMARTSM003801.0E-37142205IPR001471AP2/ERF domain
PROSITE profilePS5103225.541142199IPR001471AP2/ERF domain
PfamPF008475.1E-14142191IPR001471AP2/ERF domain
PRINTSPR003671.6E-11143154IPR001471AP2/ERF domain
CDDcd000181.23E-27150201No hitNo description
PRINTSPR003671.6E-11165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MHPSMQKAAG AYIHILADPR EFHELAKLAA PPQPRAGAQG AGDEELVPQQ QQQQQQQHHH  60
HHHHHQQAHV GSPYMLSEFG QAREMSVMVS ALAQVVAGED GRDQIAPQQQ GLALLHPAIA  120
STAEASSPSA STENEAGQSR RRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFDTAEGAAR  180
AYDEAALRFR GSRAKLNFPE NVSLRPPRPA PLPQLHYPES FPPATLLESQ PFPTIYAPQN  240
DPSGDYLEYS RLLQGAGEYQ RLSPTALLDQ VIYSQSNMAS SSSSTMLGGS VSVAPSVLAS  300
PSGVAAAAST SAASSSSSFP LLYGTGETEQ QLGYLRPPGS AAPGTGASRY SAQTWPGLGQ  360
NPPPSSSGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23143203667ATERF1
3gcc_A1e-23143203667ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1053182e-60AC105318.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1058_F05, complete sequence.
GenBankAP0149612e-60AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-60CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107227.10.0ethylene-responsive transcription factor ERF110-like, partial
TrEMBLA0A199VB671e-148A0A199VB67_ANACO; Ethylene-responsive transcription factor ERF112
STRINGXP_008784254.13e-58(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2495935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.15e-21related to AP2 6