PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco003015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 457aa MW: 51319.2 Da PI: 5.1752 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.5 | 2.8e-32 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWka 85 lp+G++F+P+d+el+ ++L +kv + + ++++ +++ev +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + +W++ Aco003015.1 58 LPKGVKFDPSDQELL-YHLIAKVGNGNakshpfINEFIpTVEEVeGICYTHPRRLP-GVKQDGSVSHFFHRTFKAYNTGTRKRRKINsdelgDVRWHK 153 799************.999999998885665553333334888878**********.677888899******************86545555889*** PP NAM 86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 tgk+k+v+ +g++vg+kk++v+y + + k+ekt+Wvmh+ +l Aco003015.1 154 TGKTKPVII-DGKHVGCKKIMVLYmsTVKGGKAEKTNWVMHQHHL 197 *********.999***********6545788889********997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-36 | 43 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.489 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-13 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 457 aa Download sequence Send to blast |
MTGPSWLIDS RRIASKIKNA SEPVDPNRYK LISNPTKACP QCKHIIDNSD VVHEWPGLPK 60 GVKFDPSDQE LLYHLIAKVG NGNAKSHPFI NEFIPTVEEV EGICYTHPRR LPGVKQDGSV 120 SHFFHRTFKA YNTGTRKRRK INSDELGDVR WHKTGKTKPV IIDGKHVGCK KIMVLYMSTV 180 KGGKAEKTNW VMHQHHLGIE EDEKDGEYVV SKLFYQQQSK PGERSAQDLR ALDTLEAVVN 240 EVEPMGIPAL LPEGHDDGRQ DIVHSPVHDS NQGIPDLLPE EHDDNTQDIV RGPVDDSNQV 300 SVYQGAQEEH GQTEKPDDQD NNPPEEAKWW EGESQFLLDS QQLAEGIAIC DEFLLSQTSC 360 GGDEPKKSRP HLSDYAHMAV EDLKKDLEEC QKLSNLENLG NLDHTNVELD TPSDFRLSQL 420 MESESGVRHI PRGEVASFSE LGVHDFASHP PDVEIKI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020089687.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-136 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A199ULY8 | 0.0 | A0A199ULY8_ANACO; NAC domain-containing protein 8 (Fragment) | ||||
STRING | XP_008800749.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-139 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco003015.1 |