PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002824.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 366aa    MW: 38918 Da    PI: 5.7039
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002824.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20188237255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Aco002824.1 188 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAFRLRG 237
                  59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.69E-32187247No hitNo description
SuperFamilySSF541713.07E-23188246IPR016177DNA-binding domain
PROSITE profilePS5103223.169188245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-32188246IPR001471AP2/ERF domain
SMARTSM003808.4E-37188251IPR001471AP2/ERF domain
PfamPF008473.0E-14189237IPR001471AP2/ERF domain
PRINTSPR003673.6E-11189200IPR001471AP2/ERF domain
PRINTSPR003673.6E-11211227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAAAIDMCNS WGVTYSDPFS EELMKALEPF INGASTISSS SSSSSPYSPS PSPSPSPLTY  60
GELTSSTPSP PPPLSSPYPF PPVSSPLFYS PSPSSSSSSS PFSHQNPIFE YGAGAYVGPV  120
GLNQLSPAQV EQIQAQIQFE QRQRQQQQPQ QQRLLAPRGP GYLGPRAQSM KHGAAAAAAA  180
PGGKATKLYR GVRQRHWGKW VAEIRLPKNR TRLWLGTFDT AEEAALAYDK AAFRLRGDFA  240
RLNFPDLRHR HLPSSSPAPL LASVDAKLQA ICQTLASTSS SAPAPKTGRS AAAAAAAPPS  300
SSAPASAAAE ESSSSSDGEA EDSSSPVSEM ETLDFTEAPW DESESFFLRK YPSYEIDWDS  360
ILSQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20187245160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6656940.0KM665694.1 Ananas bracteatus clone 50873f microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020090499.10.0ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A199VQI31e-174A0A199VQI3_ANACO; Ethylene-responsive transcription factor RAP2-4
STRINGXP_008808175.11e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.13e-40ERF family protein