PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco002699.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 25256.8 Da PI: 8.3772 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.5e-20 | 108 | 156 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r +lg+f taeeAa+a++ a+ +++g Aco002699.1 108 YRGVRQRP-WGKWAAEIRDPR----RaARKWLGTFNTAEEAARAYDLAAIEFRG 156 9*******.**********82....48************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.8E-35 | 107 | 170 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.093 | 107 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-31 | 107 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 107 | 165 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.1E-14 | 108 | 156 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.21E-31 | 108 | 165 | No hit | No description |
PRINTS | PR00367 | 2.2E-11 | 108 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 130 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MVPKQELHFS EPNSHFCIKA AAAAAAPFSQ LRSEHETAVI VAALVRVLSG QSAAPCRLCG 60 IDGCLGCETF APGGGKNEAV VLNFANGGAA AVAAVAEKRK RRKNKNLYRG VRQRPWGKWA 120 AEIRDPRRAA RKWLGTFNTA EEAARAYDLA AIEFRGARAK LNFPVPDQLP LPPPPPLRET 180 KAQSQQQQQE QKQQKRWEGE DWEMVELWDG LQDLIALDDV ELCFPLFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-21 | 108 | 165 | 6 | 64 | ATERF1 |
3gcc_A | 7e-21 | 108 | 165 | 6 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 102 | KRKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020089989.1 | 1e-167 | ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A199V2T1 | 1e-124 | A0A199V2T1_ANACO; Ethylene-responsive transcription factor ERF071 | ||||
STRING | XP_008811407.1 | 2e-60 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-20 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Aco002699.1 |