PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco001318.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 23750.5 Da PI: 6.5167 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 83 | 132 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ r r +lg+f+taeeAa a+++a+ +++g Aco001318.1 83 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAALAYDRAAIEFRG 132 8********.**********82....48************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.53E-23 | 83 | 141 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-14 | 83 | 132 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.15E-33 | 83 | 140 | No hit | No description |
PROSITE profile | PS51032 | 24.829 | 83 | 140 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-32 | 83 | 140 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-38 | 83 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 84 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 106 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MPPHAIIVSA LVHVISGYAT APPDLPLLAR PNACRLCRID GCLGCGFFSF STGKEETAAT 60 AAAAAAAPRV DEAQRGRKKK KNKYRGVRQR PWGKWAAEIR DPRRAVRKWL GTFDTAEEAA 120 LAYDRAAIEF RGPRAKLNFP FPEQPHQGTD HDLGSPPTPS NYPTMQKQES SNNNEDDDNN 180 NNATSRGEGA ETVDIWDGLQ DLMQLDDGEM WFPPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 80 | 141 | 2 | 64 | ATERF1 |
3gcc_A | 1e-22 | 80 | 141 | 2 | 64 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU964453 | 3e-70 | EU964453.1 Zea mays clone 278992 AP2 domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020080968.1 | 1e-159 | ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 4e-32 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A1U9Y639 | 1e-123 | A0A1U9Y639_9POAL; ERF109 | ||||
STRING | BRADI3G38140.1 | 3e-64 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-29 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Aco001318.1 |
Publications ? help Back to Top | |||
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