PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco000576.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 190aa    MW: 20220.8 Da    PI: 11.3472
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco000576.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.6e-2183132255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +grW+AeIrdp     r +r++lg+f+taeeAa+a++ a+ +++g
  Aco000576.1  83 RFRGVRRRP-WGRWAAEIRDPA----RrRRVWLGTFDTAEEAAAAYDSAAVRMRG 132
                  69*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-3683146IPR001471AP2/ERF domain
PROSITE profilePS5103225.11983140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-3183140IPR001471AP2/ERF domain
PfamPF008474.3E-1583132IPR001471AP2/ERF domain
CDDcd000183.30E-1983142No hitNo description
PRINTSPR003673.5E-118495IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-2384141IPR016177DNA-binding domain
PRINTSPR003673.5E-11106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
METLANPVRA MAAAVGSAAP RAPPCGAKTA RRPRIVRIVL ADADATDSSS SSSGDEDEAG  60
RRRRRGVKRS VLEVTAGASE AVRFRGVRRR PWGRWAAEIR DPARRRRVWL GTFDTAEEAA  120
AAYDSAAVRM RGPRAVTNFP ATIPAPELPA PPEKGGGATT SSATIGDSHP YPSPLSVLCD  180
SLFVFEFHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2284147670ATERF1
3gcc_A2e-2284147670ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187106RRRPWGRWAAEIRDPARRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099492.11e-125pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A0A9AUG24e-40A0A0A9AUG2_ARUDO; Uncharacterized protein
STRINGPavir.Ia00165.1.p2e-37(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-13cytokinin response factor 4