PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn386171

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 963aa MW: 107535 Da PI: 9.5687

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn386171	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.8	5.9e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E e++++a +++G++ Wk++a+ + +R+ +++ Achn386171 46 HWSKKELERFYEAYRKYGKD-WKKVAAVVK-NRSTEMV 81 5***************99.****9.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.35E-10	42	91	IPR009057	Homeodomain-like
PROSITE profile	PS51293	9.228	42	93	IPR017884	SANT domain
SMART	SM00717	5.8E-5	43	91	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.7E-5	46	81	IPR009057	Homeodomain-like
Pfam	PF00249	7.0E-8	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	1.09E-5	47	81	No hit	No description
SMART	SM01135	4.3E-58	596	697	IPR033471	DIRP domain
Pfam	PF06584	6.7E-33	596	696	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 963 aa Download sequence Send to blast
MAPTRKTRSV NKRFTYVDKV SPSKDGEDVN KSAQRKRKLS DMLGSHWSKK ELERFYEAYR 60 KYGKDWKKVA AVVKNRSTEM VEALYSMNKA YLSLPEGTAS VVGLIAMMTD HYCNLDGSDS 120 EQESNDGTVT SNKPQKHVRG KSQLNTSKGS DELFISHSQP VASSSGCQMI LKKKRSGALE 180 ESFIFQLVIR IAYGKIASKF AAGTRPRVVG KRTPRFPISY SHDKVNREKF FSSARQGLKL 240 KVDASVDDVA HEVALALAEA SQRGGSAQVS QTPNRRLIQG DERMRAELEL TSAKLDSEID 300 EDGFEGSLGS TEADNEHFAR DKKYLMEIQD HGTAEARKGR RLNIKKLEGD DSINNHLDDI 360 KEACSATEGH LSAFREKLEF EVVAGKVARS SSLVSRKKSK KVLFTRDEGS AFDALQTLAD 420 LSLMMPATAT ENESSVHIKE DDDDLVASHQ RDRSKSSRVK GKGNQLISGF EPFALKTSKL 480 GKGSALDVSA IPEAKEDPQQ STAKISRKKQ KTLASKARDA GKKILSKGKR SSYSILQQKQ 540 GKSVGHLEHS ASSTNPREGK DDSALSTVQI PIANQEKVSN CLSNRHLRRW CAFEWFYSAV 600 DYPWFAKREF VEYLNHVGLG HVPRLTRVEW GVIRSSLGKP RRFSEQFLSE EKEKLNQYRE 660 SVRTHYTELR AGTRQGLPTD LARPLSVGQR VTAIHPRTRE IHDGSVLTVD HTRCRVQFDR 720 PELGVEFVLD IDCMPIKPLD NLPTSLARNE VGIDKFFENL NELKTNGPAK DQKPEEYKKP 780 SHGENLEHLD VPSNVSPSTY PMSNLLKQAK GAPANSNLQD KIGFKETANN QQSVDSQPYI 840 RVQIQAKEAD VQALAELTRA LDKKEAVMSE LRYMNDDVVE KQRDGDSALK DSEPFKKQYA 900 AVLVQLNEKC TERQFPPADV AEILDSAVTG LQPRCSQNLP LYSDIQKCMG IIRNQILALI 960 PT*

Sequence ? help Back to Top

Protein Sequence Length: 963 aa Download sequence Send to blast

MAPTRKTRSV NKRFTYVDKV SPSKDGEDVN KSAQRKRKLS DMLGSHWSKK ELERFYEAYR  60
KYGKDWKKVA AVVKNRSTEM VEALYSMNKA YLSLPEGTAS VVGLIAMMTD HYCNLDGSDS  120
EQESNDGTVT SNKPQKHVRG KSQLNTSKGS DELFISHSQP VASSSGCQMI LKKKRSGALE  180
ESFIFQLVIR IAYGKIASKF AAGTRPRVVG KRTPRFPISY SHDKVNREKF FSSARQGLKL  240
KVDASVDDVA HEVALALAEA SQRGGSAQVS QTPNRRLIQG DERMRAELEL TSAKLDSEID  300
EDGFEGSLGS TEADNEHFAR DKKYLMEIQD HGTAEARKGR RLNIKKLEGD DSINNHLDDI  360
KEACSATEGH LSAFREKLEF EVVAGKVARS SSLVSRKKSK KVLFTRDEGS AFDALQTLAD  420
LSLMMPATAT ENESSVHIKE DDDDLVASHQ RDRSKSSRVK GKGNQLISGF EPFALKTSKL  480
GKGSALDVSA IPEAKEDPQQ STAKISRKKQ KTLASKARDA GKKILSKGKR SSYSILQQKQ  540
GKSVGHLEHS ASSTNPREGK DDSALSTVQI PIANQEKVSN CLSNRHLRRW CAFEWFYSAV  600
DYPWFAKREF VEYLNHVGLG HVPRLTRVEW GVIRSSLGKP RRFSEQFLSE EKEKLNQYRE  660
SVRTHYTELR AGTRQGLPTD LARPLSVGQR VTAIHPRTRE IHDGSVLTVD HTRCRVQFDR  720
PELGVEFVLD IDCMPIKPLD NLPTSLARNE VGIDKFFENL NELKTNGPAK DQKPEEYKKP  780
SHGENLEHLD VPSNVSPSTY PMSNLLKQAK GAPANSNLQD KIGFKETANN QQSVDSQPYI  840
RVQIQAKEAD VQALAELTRA LDKKEAVMSE LRYMNDDVVE KQRDGDSALK DSEPFKKQYA  900
AVLVQLNEKC TERQFPPADV AEILDSAVTG LQPRCSQNLP LYSDIQKCMG IIRNQILALI  960
PT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028104048.1	0.0	protein ALWAYS EARLY 3
Refseq	XP_028104049.1	0.0	protein ALWAYS EARLY 3
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A2R6P4C9	0.0	A0A2R6P4C9_ACTCH; Protein ALWAYS EARLY like
STRING	XP_010243545.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]