PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn362451
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WOX
Protein Properties Length: 301aa    MW: 34040 Da    PI: 5.9973
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn362451genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.71.5e-2196156257
                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  Achn362451  96 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 156
                 89*****************99**************************************97 PP
2Wus_type_Homeobox101.36.9e-3396158365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        r+RWtPtp Q++iLe+++++G  tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
         Achn362451  96 RQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 158
                        89***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.09492157IPR001356Homeobox domain
SuperFamilySSF466894.71E-1994160IPR009057Homeodomain-like
SMARTSM003895.1E-1594161IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-1895161IPR009057Homeodomain-like
CDDcd000862.81E-1496158No hitNo description
PfamPF000462.2E-1996156IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDWENQQKQQ QNQQQHEELI NGNNNSSGNN GIFVKVMTDE QMEILRKQIA AYAAICEQLV  60
EMHKSLTSHP DLSGARLGNL YCDPFVTSVG HKITGRQRWT PTPVQLQILE RIFDQGNGTP  120
SKQKIKEITS ELSQHGQISE TNVYNWFQNR RARSKRKQQV TAPNNAESEM ETEVESSNEK  180
KTKSEDFQPQ HNQATRAEDL CFQNPEISSG MHSVDSQSNK VEPMFPTNGI SKPARLLLQE  240
KDTISRHLDA LLFLLMSIFN GHNIIACSLM NAGIDHLIGK MEVSGSYSPY LQEDDYNMTS  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149157RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109617.11e-143WUSCHEL-related homeobox 8
SwissprotO817881e-82WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A2R6Q2B61e-174A0A2R6Q2B6_ACTCH; WUSCHEL-related homeobox like
STRINGSolyc02g082670.2.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56752437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.13e-82WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]