PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn362451 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | WOX | ||||||||
Protein Properties | Length: 301aa MW: 34040 Da PI: 5.9973 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.7 | 1.5e-21 | 96 | 156 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Achn362451 96 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 156 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 101.3 | 6.9e-33 | 96 | 158 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Achn362451 96 RQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 158 89***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.094 | 92 | 157 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-19 | 94 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.1E-15 | 94 | 161 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-18 | 95 | 161 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.81E-14 | 96 | 158 | No hit | No description |
Pfam | PF00046 | 2.2E-19 | 96 | 156 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MDWENQQKQQ QNQQQHEELI NGNNNSSGNN GIFVKVMTDE QMEILRKQIA AYAAICEQLV 60 EMHKSLTSHP DLSGARLGNL YCDPFVTSVG HKITGRQRWT PTPVQLQILE RIFDQGNGTP 120 SKQKIKEITS ELSQHGQISE TNVYNWFQNR RARSKRKQQV TAPNNAESEM ETEVESSNEK 180 KTKSEDFQPQ HNQATRAEDL CFQNPEISSG MHSVDSQSNK VEPMFPTNGI SKPARLLLQE 240 KDTISRHLDA LLFLLMSIFN GHNIIACSLM NAGIDHLIGK MEVSGSYSPY LQEDDYNMTS 300 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 157 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00617 | PBM | Transfer from AT4G35550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028109617.1 | 1e-143 | WUSCHEL-related homeobox 8 | ||||
Swissprot | O81788 | 1e-82 | WOX13_ARATH; WUSCHEL-related homeobox 13 | ||||
TrEMBL | A0A2R6Q2B6 | 1e-174 | A0A2R6Q2B6_ACTCH; WUSCHEL-related homeobox like | ||||
STRING | Solyc02g082670.2.1 | 1e-126 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5675 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 3e-82 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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