PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn289301
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 322aa    MW: 35779.6 Da    PI: 8.4083
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn289301genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.92.3e-54151421128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vls+ +++
  Achn289301  15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-SIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLSSgGSQ 112
                 79****************************.89***************988899****************************************97788 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +vg+kk Lvfy g+ pkg+kt+W+mheyrl
  Achn289301 113 KVGVKKALVFYGGKPPKGVKTNWIMHEYRL 142
                 8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-657176IPR003441NAC domain
PROSITE profilePS5100562.30315176IPR003441NAC domain
PfamPF023652.5E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MESTDSSTGS PQPILPPGFR FHPTDEELVV HYLKKKAASA PLPVSIIAEV DLYKFDPWEL  60
PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLSSGG SQKVGVKKAL  120
VFYGGKPPKG VKTNWIMHEY RLVENKLNSK PPGCDAANKK ASLRLDDWVL CRIYKKSYLL  180
SPMDHERDDT MSDMLARMPP SSIPLCQQTP KLPPEKATSY GSFLGNEHTL FDEMLGHDNA  240
YISHLASKPQ LPMKRALPSV YWVDDVGEAG SSSSKRLIHL DGNEGSTSKT DETNSMATLL  300
SSLSQLPQTP SMMDDVFRWY S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-7511776166NO APICAL MERISTEM PROTEIN
1ut4_B3e-7511776166NO APICAL MERISTEM PROTEIN
1ut7_A3e-7511776166NO APICAL MERISTEM PROTEIN
1ut7_B3e-7511776166NO APICAL MERISTEM PROTEIN
4dul_A3e-7511776166NAC domain-containing protein 19
4dul_B3e-7511776166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3190500.0KF319050.1 Actinidia chinensis NAC protein 1 (NAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021606877.11e-155NAC transcription factor 56
SwissprotQ9LD441e-110NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A075EB520.0A0A075EB52_ACTCH; NAC protein 1
TrEMBLA0A2R6QWW80.0A0A2R6QWW8_ACTCH; NAC transcription factor
STRINGcassava4.1_022751m1e-155(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-112NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Nieuwenhuizen NJ, et al.
    Natural variation in monoterpene synthesis in kiwifruit: transcriptional regulation of terpene synthases by NAC and ETHYLENE-INSENSITIVE3-like transcription factors.
    Plant Physiol., 2015. 167(4): p. 1243-58
    [PMID:25649633]