PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn289231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 440aa MW: 49211.7 Da PI: 7.4097 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.8 | 6.1e-51 | 147 | 271 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhP+deel+++yL kkv+ ++l + evd++k+ePwd+p+++ + kewyf+s+rd+kyatg r+nrat sgyWkatgkd+++l+ kg+l Achn289231 147 LPPGFRFHPRDEELICDYLVKKVTCCGCHL---MIEVDLNKCEPWDIPETACVGGKEWYFYSQRDRKYATGLRTNRATISGYWKATGKDRPILR-KGTL 241 79***********************99888...789************7777799**************************************9.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg++ktLvfy+grapkg+ktdWvmhe+rle Achn289231 242 VGMRKTLVFYQGRAPKGRKTDWVMHEFRLE 271 ***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.12E-59 | 137 | 295 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.354 | 147 | 294 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-25 | 148 | 270 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 440 aa Download sequence Send to blast |
MNSAEEESYK NEGTYNIDTC NSTLKSCGIA DSVSSAWGND EFFHVFSSNR CAKGDEAKPA 60 DKYLLFERFI QSGLHCLGLH SSNEIDLAGL WKETEPLAHL RRQGQSNALM DFLDCITRSH 120 DSKLVFFGRG SNGKQLMSNL SMVEARLPPG FRFHPRDEEL ICDYLVKKVT CCGCHLMIEV 180 DLNKCEPWDI PETACVGGKE WYFYSQRDRK YATGLRTNRA TISGYWKATG KDRPILRKGT 240 LVGMRKTLVF YQGRAPKGRK TDWVMHEFRL EGPLGLPITS SLKEDWVLCR VFYKNREVAA 300 RQGIGSSLND DTISSSSLPP LMDSYITFDQ TQTNNNNITN DLYEQVPCFS IFTPNQITPI 360 SSHVTHMNPT NMSTKLTTPT TLGGIKPDLG SCLNPFSCDK KVLKAAPNHL TEKGSPSFGN 420 VSSESFLSDV GLSSMWNQY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-49 | 143 | 297 | 11 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028081260.1 | 1e-171 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-106 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2R6QCY7 | 0.0 | A0A2R6QCY7_ACTCH; NAC domain-containing protein | ||||
STRING | XP_007149262.1 | 1e-148 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-100 | NAC domain containing protein 1 |