PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn273871

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 469aa MW: 53955.1 Da PI: 8.4169

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn273871	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	33.2	1e-10	103	128	27	52
RWP-RK 27 vclTvLKriCRqyGIkRWPhRkiksl 52 v+ ++ Kr CR+yGI+RWP R + ++ Achn273871 103 VSISTFKRVCRKYGINRWPPRNVDKV 128 999*******************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	8.9E-8	98	128	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.21E-17	164	257	No hit	No description
Pfam	PF00564	2.5E-16	172	253	IPR000270	PB1 domain
PROSITE profile	PS51745	23.227	172	255	IPR000270	PB1 domain
SMART	SM00666	3.6E-15	172	255	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.1E-16	172	252	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MVVLMRRHSG KEKFSPNKRL GFECFDSCKH HEMREKNGNI AHKKAFAEME RVLRLLLKIY 60 KLPLALTWVS CGACKTLLPV KDLYMIRDYD YVAFRELHTF SMVSISTFKR VCRKYGINRW 120 PPRNVDKVRP PASHVDHQEE VPQLNSNLPS NQASASIAHT QPHDTVMQNA NTVNVKAKYG 180 NDITIKFQLS LSSGLVELQQ QVAKRLNLEV GSYHIKYKDE EDELILIACD EDLQDCIHTC 240 RSPGSNAVIL HIDPISQVYH TKSVTPVSYI DCFPASLRPY IRHVKDVAFD GNCGFRAIAG 300 LMNIGEEDGW VQVRRDLLTE LNLHVDDYKI MYGQQRIDEL THCLSWFDGC AEMDRWMTMP 360 DMGHLIASRY NIVLYHLSNK QCLTFLPLRS LPIPAASRRY ITIGFVNNNH FVKVFLFPGH 420 PVPPVARLWM QYRYQCAQGW DTTYNGRIQQ FRELVNSNVT TTDVISLY*

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MVVLMRRHSG KEKFSPNKRL GFECFDSCKH HEMREKNGNI AHKKAFAEME RVLRLLLKIY  60
KLPLALTWVS CGACKTLLPV KDLYMIRDYD YVAFRELHTF SMVSISTFKR VCRKYGINRW  120
PPRNVDKVRP PASHVDHQEE VPQLNSNLPS NQASASIAHT QPHDTVMQNA NTVNVKAKYG  180
NDITIKFQLS LSSGLVELQQ QVAKRLNLEV GSYHIKYKDE EDELILIACD EDLQDCIHTC  240
RSPGSNAVIL HIDPISQVYH TKSVTPVSYI DCFPASLRPY IRHVKDVAFD GNCGFRAIAG  300
LMNIGEEDGW VQVRRDLLTE LNLHVDDYKI MYGQQRIDEL THCLSWFDGC AEMDRWMTMP  360
DMGHLIASRY NIVLYHLSNK QCLTFLPLRS LPIPAASRRY ITIGFVNNNH FVKVFLFPGH  420
PVPPVARLWM QYRYQCAQGW DTTYNGRIQQ FRELVNSNVT TTDVISLY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6QMR0	0.0	A0A2R6QMR0_ACTCH; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-17	NIN like protein 7