PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn270291
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 329aa    MW: 36390.8 Da    PI: 8.1531
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn270291genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.37.1e-1719110273
    trihelix   2 WtkqevlaLiearr....................emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                 Wt +e+++Liea++                    +m ++++++k ++ +W++v +++++ g+ rs++qC++kw+nl +++kk+++ e++r+s
  Achn270291  19 WTVEETMVLIEAKKmdderrmkrsiggessegiiKMSSSSSTTKPAELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVRDYERRRSS 110
                 **************877777777777777777777777777777********************************************9864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7711195IPR017877Myb-like domain
PfamPF138371.0E-1218110No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MANQGGGNSV FRDYRKGNWT VEETMVLIEA KKMDDERRMK RSIGGESSEG IIKMSSSSST  60
TKPAELRWKW VEDYCWRNGC LRSQNQCNDK WDNLMRDFKK VRDYERRRSS SGAGDDNGGG  120
SYWKMEKHER KERNLPSNTL PDIYQALMEV VERKESVSPR VLALPGPAGA LLPPLPPPPA  180
AAAPLQALPH HDLPLPTVDS GDTSEHSDSP AAKKRRRGSG EGTSCGIHPS GTPPPPPPPP  240
PSHDQIIGCA ISRSASIIVE AIQACDERED RRHRDLLSLQ ERRLHIEESN TEITRQGFNG  300
LVDAINKLAN SILALANSNH HQTTTTPR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211217AKKRRRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754413e-34HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755143e-34HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028062501.11e-116WASH complex subunit 1 isoform X1
TrEMBLA0A2R6Q5I61e-172A0A2R6Q5I6_ACTCH; Trihelix transcription factor
STRINGGorai.010G171500.11e-110(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48212236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.11e-55Trihelix family protein