PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn247931

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 111aa MW: 12470.4 Da PI: 10.9675

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn247931	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	97.1	2.6e-30	6	84	51	128
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++ewyfF +rd ky++g ++nra++sgyWk+tg dk+vls+ ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl Achn247931 6 ATSGKQEWYFFRSRDWKYPNGAKPNRAATSGYWKTTGIDKPVLSSgRSQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 84 556789************************************978889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	32.938	1	101	IPR003441	NAC domain
SuperFamily	SSF101941	3.4E-30	7	89	IPR003441	NAC domain
Pfam	PF02365	1.2E-14	11	84	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MNSAKATSGK QEWYFFRSRD WKYPNGAKPN RAATSGYWKT TGIDKPVLSS GRSQKVGVKK 60 ALVFYGGKPP KGVKTNWIMH EYRLVEYKLN SKPPGCDATN KKASLRLRAW *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-34	5	86	65	144	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-34	5	86	65	144	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-34	5	86	65	144	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-34	5	86	65	144	NO APICAL MERISTEM PROTEIN
3swm_A	4e-34	5	86	68	147	NAC domain-containing protein 19
3swm_B	4e-34	5	86	68	147	NAC domain-containing protein 19
3swm_C	4e-34	5	86	68	147	NAC domain-containing protein 19
3swm_D	4e-34	5	86	68	147	NAC domain-containing protein 19
3swp_A	4e-34	5	86	68	147	NAC domain-containing protein 19
3swp_B	4e-34	5	86	68	147	NAC domain-containing protein 19
3swp_C	4e-34	5	86	68	147	NAC domain-containing protein 19
3swp_D	4e-34	5	86	68	147	NAC domain-containing protein 19
4dul_A	4e-34	5	86	65	144	NAC domain-containing protein 19
4dul_B	4e-34	5	86	65	144	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF319046	1e-115	KF319046.1 Actinidia arguta NAC protein 1 (NAC1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028055946.1	2e-56	NAC transcription factor 56-like
Swissprot	Q9LD44	4e-53	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A075EAR7	5e-60	A0A075EAR7_ACTAR; NAC protein 1
TrEMBL	A0A075EB52	5e-60	A0A075EB52_ACTCH; NAC protein 1
TrEMBL	A0A2R6QWW8	5e-60	A0A2R6QWW8_ACTCH; NAC transcription factor
STRING	POPTR_0001s41490.1	3e-55	(Populus trichocarpa)
STRING	XP_010089502.1	4e-55	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1814	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-55	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]