PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn247931 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 111aa MW: 12470.4 Da PI: 10.9675 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97.1 | 2.6e-30 | 6 | 84 | 51 | 128 |
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++ewyfF +rd ky++g ++nra++sgyWk+tg dk+vls+ ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl Achn247931 6 ATSGKQEWYFFRSRDWKYPNGAKPNRAATSGYWKTTGIDKPVLSSgRSQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 84 556789**************************************978889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 32.938 | 1 | 101 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.4E-30 | 7 | 89 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-14 | 11 | 84 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MNSAKATSGK QEWYFFRSRD WKYPNGAKPN RAATSGYWKT TGIDKPVLSS GRSQKVGVKK 60 ALVFYGGKPP KGVKTNWIMH EYRLVEYKLN SKPPGCDATN KKASLRLRAW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-34 | 5 | 86 | 65 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-34 | 5 | 86 | 65 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-34 | 5 | 86 | 65 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-34 | 5 | 86 | 65 | 144 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-34 | 5 | 86 | 68 | 147 | NAC domain-containing protein 19 |
3swm_B | 4e-34 | 5 | 86 | 68 | 147 | NAC domain-containing protein 19 |
3swm_C | 4e-34 | 5 | 86 | 68 | 147 | NAC domain-containing protein 19 |
3swm_D | 4e-34 | 5 | 86 | 68 | 147 | NAC domain-containing protein 19 |
3swp_A | 4e-34 | 5 | 86 | 68 | 147 | NAC domain-containing protein 19 |
3swp_B | 4e-34 | 5 | 86 | 68 | 147 | NAC domain-containing protein 19 |
3swp_C | 4e-34 | 5 | 86 | 68 | 147 | NAC domain-containing protein 19 |
3swp_D | 4e-34 | 5 | 86 | 68 | 147 | NAC domain-containing protein 19 |
4dul_A | 4e-34 | 5 | 86 | 65 | 144 | NAC domain-containing protein 19 |
4dul_B | 4e-34 | 5 | 86 | 65 | 144 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF319046 | 1e-115 | KF319046.1 Actinidia arguta NAC protein 1 (NAC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028055946.1 | 2e-56 | NAC transcription factor 56-like | ||||
Swissprot | Q9LD44 | 4e-53 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A075EAR7 | 5e-60 | A0A075EAR7_ACTAR; NAC protein 1 | ||||
TrEMBL | A0A075EB52 | 5e-60 | A0A075EB52_ACTCH; NAC protein 1 | ||||
TrEMBL | A0A2R6QWW8 | 5e-60 | A0A2R6QWW8_ACTCH; NAC transcription factor | ||||
STRING | POPTR_0001s41490.1 | 3e-55 | (Populus trichocarpa) | ||||
STRING | XP_010089502.1 | 4e-55 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1814 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-55 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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