PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn244681
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 318aa    MW: 36122.3 Da    PI: 5.9538
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn244681genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.3e-1164120155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+++GV+ ++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k++g
  Achn244681  64 SRFRGVSKHRWTGRFEAHLWDkLSWNVtqKKKGKQ-GAYDEEESAARAYDLAALKYWG 120
                 789******************88887784446666.9*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.38E-1464130IPR016177DNA-binding domain
PfamPF008471.8E-864120IPR001471AP2/ERF domain
CDDcd000185.41E-1864130No hitNo description
SMARTSM003803.1E-1965134IPR001471AP2/ERF domain
PROSITE profilePS5103218.00465128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-1265129IPR001471AP2/ERF domain
PRINTSPR003672.1E-56677IPR001471AP2/ERF domain
PROSITE profilePS510329.216117187IPR001471AP2/ERF domain
SMARTSM003800.0032152193IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-5161189IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-6162188IPR001471AP2/ERF domain
PRINTSPR003672.1E-5169189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAMIMVKREE NQPKRGIESE NLETKSVKRR RTDPNAVGVA RDKQLMEQVD QTSSTPTTTV  60
KRSSRFRGVS KHRWTGRFEA HLWDKLSWNV TQKKKGKQGA YDEEESAARA YDLAALKYWG  120
TSTLTNFPVS DYEKEIEIMQ TVTKEEYLAC LRRKSSGFSR GTQEEAAHAY DIAAIEYRGI  180
NAVTNFDLSS YIRWLKPEAN TQISTQEQQI TNTEFYTMPS SLFNSVDESH SLLFHANDFS  240
LEVHETKVPV SAYTKPSSPT ALGLLLRSSV FRELVEKNSN VFEDEYVGED IKHQLQMGGE  300
DGFGGMFFDG FGDIPWC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028104692.11e-142AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A2R6RUN60.0A0A2R6RUN6_ACTCH; Ethylene-responsive transcription factor
STRINGVIT_14s0108g00050.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34402145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-54AP2 family protein