PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn244681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 318aa MW: 36122.3 Da PI: 5.9538 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.7 | 4.3e-11 | 64 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ ++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a++k++g Achn244681 64 SRFRGVSKHRWTGRFEAHLWDkLSWNVtqKKKGKQ-GAYDEEESAARAYDLAALKYWG 120 789******************88887784446666.9*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.38E-14 | 64 | 130 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.8E-8 | 64 | 120 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.41E-18 | 64 | 130 | No hit | No description |
SMART | SM00380 | 3.1E-19 | 65 | 134 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.004 | 65 | 128 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-12 | 65 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-5 | 66 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 9.216 | 117 | 187 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0032 | 152 | 193 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-5 | 161 | 189 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-6 | 162 | 188 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-5 | 169 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 318 aa Download sequence Send to blast |
MAMIMVKREE NQPKRGIESE NLETKSVKRR RTDPNAVGVA RDKQLMEQVD QTSSTPTTTV 60 KRSSRFRGVS KHRWTGRFEA HLWDKLSWNV TQKKKGKQGA YDEEESAARA YDLAALKYWG 120 TSTLTNFPVS DYEKEIEIMQ TVTKEEYLAC LRRKSSGFSR GTQEEAAHAY DIAAIEYRGI 180 NAVTNFDLSS YIRWLKPEAN TQISTQEQQI TNTEFYTMPS SLFNSVDESH SLLFHANDFS 240 LEVHETKVPV SAYTKPSSPT ALGLLLRSSV FRELVEKNSN VFEDEYVGED IKHQLQMGGE 300 DGFGGMFFDG FGDIPWC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028104692.1 | 1e-142 | AP2-like ethylene-responsive transcription factor At1g79700 | ||||
TrEMBL | A0A2R6RUN6 | 0.0 | A0A2R6RUN6_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | VIT_14s0108g00050.t01 | 1e-134 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3440 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-54 | AP2 family protein |