PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn236181
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 410aa    MW: 43355 Da    PI: 9.3331
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn236181genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.7e-12225250126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +++++C+++++tG+Ck+G++C+++H+
  Achn236181 225 PGQPECQYYMKTGECKFGSSCRYHHP 250
                 5789*********************8 PP
2zf-CCCH36.57.9e-12301325226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 + +lC ++a++G Ck+G++CkF H+
  Achn236181 301 GVPLCTHYAQNGVCKFGPSCKFDHP 325
                 689*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.155224252IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6224251IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-10226250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6228252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4230251IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.962299327IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5299326IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9301325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5302327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5304324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MESKRLRKRG DCGLDGREKD GKRKYKVGVK RITRRSRRER FRFELLALRC SEKLDLMETN  60
CQVVGSLGTG RGEYPERAGQ PVCQPSGIQM PAPAAGPLPV PGSAIYPPMQ SSSVPSSQQY  120
GVAAGNWPVA RPALVPGSYL QGTYSPMLIP PGMVPFTGWN PYQLQAPVST VASPSTQSTV  180
GAAPFYGITQ LSPSGSSYTG AYLPLPSSAG PSSSSQKEHT FPERPGQPEC QYYMKTGECK  240
FGSSCRYHHP AEWSTLKASF ALNPKGLPLR PMLEQSGVHQ ESVENLGCSP CPSCQSIHPK  300
GVPLCTHYAQ NGVCKFGPSC KFDHPVGPMS YSPSASSLAD MPVAPFPVGS SKGTLAPSSS  360
SSDLRPDLIS GSNKDTLSTR MSSSTSSSSG SVGSILSKSG SASHPSIQQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028102410.11e-135zinc finger CCCH domain-containing protein 32-like isoform X2
TrEMBLA0A2R6Q3Q61e-162A0A2R6Q3Q6_ACTCH; Zinc finger CCCH domain-containing protein
STRINGPGSC0003DMT4000583231e-112(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.26e-63C3H family protein