PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn221871 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 397aa MW: 45143.4 Da PI: 4.67 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.7 | 2.4e-32 | 34 | 173 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWka 85 lp+G++F+P+d+e++++ L+k g+ + +e+i++vd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + +W++ Achn221871 34 LPRGVKFDPSDQEIMWHLLAKVGVGNMkphpfI--DEFIPTVDeddgICYTHPQNLP-GVKQDGSVSHFFHRAIKAYNTGTRKRRKIHgddfsDVRWHK 129 799************777776644443564332..334666644556**********.677888899******************85555555899*** PP NAM 86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 tg++k+vl +g ++g+kk++v+y r k+ekt+Wvmh+y+l Achn221871 130 TGRTKPVLL-DGVQTGCKKIMVLYvsPVRGGKAEKTNWVMHQYHL 173 *********.99************6545888889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-37 | 23 | 192 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.399 | 34 | 192 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-13 | 35 | 173 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MTLDQIVLWL IFSRLTRYEN WPRLRMVSQE WPGLPRGVKF DPSDQEIMWH LLAKVGVGNM 60 KPHPFIDEFI PTVDEDDGIC YTHPQNLPGV KQDGSVSHFF HRAIKAYNTG TRKRRKIHGD 120 DFSDVRWHKT GRTKPVLLDG VQTGCKKIMV LYVSPVRGGK AEKTNWVMHQ YHLGTEEDEK 180 EGQYVISKVL YQQQQGKQTD KFEHDLPDGT DVMIANVDPV TPQSVTPDPP CTEKRLCCID 240 PNVLHHEIGH IEDEVEAAFE EPNHQDSLMV ENHTDLAADN NDNQTGEEPK WWDSESQNLL 300 DSQQLVEGLS LCDELLRSQS PGRDGNESGE LERKPCLSDY AHLGRENLKK DLEACQDLVL 360 DPANIELDTP PDFRLSQLEF ESQDSFLAWG GSKPVD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028087922.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X2 | ||||
Swissprot | Q6NQK2 | 1e-152 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A2R6P3Q6 | 0.0 | A0A2R6P3Q6_ACTCH; NAC domain-containing protein (Fragment) | ||||
STRING | VIT_01s0011g02990.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8162 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-154 | NAC family protein |