PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn181481
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 1088aa    MW: 121408 Da    PI: 9.5043
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn181481genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-075186340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++ E e++++a +++G + W+++a  +  +R+++++
       Achn181481 51 QWSKKELERFYEAYRKYGQD-WEKVAGAVH-NRSAEMV 86
                     6*****************99.*********.***9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.18E-104597IPR009057Homeodomain-like
SMARTSM007170.00124896IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-55087IPR009057Homeodomain-like
PfamPF002491.0E-65186IPR001005SANT/Myb domain
CDDcd001679.81E-55286No hitNo description
PfamPF065848.2E-27640740IPR033471DIRP domain
SMARTSM011352.2E-44640741IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1088 aa     Download sequence    Send to blast
MEKLVMAPTR KSRSVNKRFS NYTEASRDSN DGNPKKSRQR KRKLSNMLGT QWSKKELERF  60
YEAYRKYGQD WEKVAGAVHN RSAEMVEVLY HMNKAYLSLP DGTASVVGLI AMMTDHYNVL  120
EGSDSGQESN GASPLTRKTQ KGGQGNVQFH ASKEDLLLSP PVALTNDGYF SSLKWRHSDG  180
CAVRKRTPRF PVTHSFRKDD NENHDSPNKS SRNSQLGDDV EHVAALALTE ASLGEGSPQV  240
SPSPFKSDHM KPSPFQSRER KHSQPEKNRA KLCGFAIKKD GLEITLGSKG TENGDYTRYK  300
SALTEKGKRV YSKKEKVEDI RINQFDNGWE AFTGTESGLN GDAKEEDIEV ANPKIEHSSS  360
LGKRKRKKKL LFGAFDALQT LADLSLMMPA ETVESVSQSS MRLFKDYHLS RMVLQKEEGV  420
KYVPESFVQL KEEKPPFDLD NGSSVNEAMF DRRDKTKLFG CREKAQHGFS GRETPTSKKS  480
KLVKDVAANA NVNSEGEQQS LPGNKPLKRK HKSSLLKDLA EEEEIFVVKN KCTGQKISPS  540
KQRESIRPVE CSSSGSDKKK VGNDSAVSTT EIPATSHTNL SIKQRSRRKM LPGSTQIKKG  600
IKSPGETSND QPNKYSTLQD KLSCCLSSSM VRKWCTFEWF YRAIDYPWFA NSEFVEYLNH  660
VGLGDIPRLN RVERGVIRKS LGKPRRFSEQ YLLEEKEKLK QYRESVRRHY AELRAGIRDG  720
LPTDLARSLS VGQRVIALHP KSREVHDGSV LTVDHDKCRI QFDRPELGVE FVMDIDCMPL  780
NPLENMPEAL KKQSIGVDKF SLNPRELKAR QLNIGKPVVF APSEHLENAC GAIHTLMKKA  840
RSDSIYPISK DKAEPICMAN APQATYNHPC TVAHMHAREA DTQALAELTH APNIKVSTAL  900
LNSRQSNTYP WESLPSCLKP LATSSGFNAP HDQESGSNVI EIIKDSRFKA HKMVDAAVQV  960
IASIKEGEDV FERIGEALDS LDKQKFTPDC GPSVMKSAEQ ANGGAVQNPL FSTSETLQRG  1020
VCRRTISTGR YGADNKFCCY KLASLLPSEP SHLQRDTNVH GEGQNPAIST CTNLHALTLI  1080
CSISKSE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362368KRKRKKK
2363367RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028069630.10.0protein ALWAYS EARLY 2 isoform X3
TrEMBLA0A2R6RAK80.0A0A2R6RAK8_ACTCH; Protein ALWAYS EARLY like isoform 1
STRINGXP_010241815.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-166DNA binding