PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn173411

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

ARR-B

Protein Properties

Length: 660aa MW: 71195.3 Da PI: 6.1241

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn173411	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	25.5	3e-08	226	247	1	22
G2-like 1 kprlrWtpeLHerFveaveqLG 22 kpr++W+ eLH++Fv+av+qLG Achn173411 226 KPRVVWSVELHQQFVSAVSQLG 247 79*******************6 PP
2	Response_reg	71.9	2.5e-24	39	150	1	109
EEEESSSHHHHHHHHHHHH..HTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqale..kegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+ + +++l+q+l+ ++ v+++++++ al+ll+ek+ +D++l D+ mp+mdG++ll++ e +lp+i+++a g + + + ++ G Achn173411 39 VLVVDDDVTCLRILEQMLRrcMYHVLAVTTCSEATVALNLLREKRgcFDVVLSDVYMPDMDGFKLLEHVGLEM-DLPVIMMSADGRTSAVMRGIRHG 134 89***************6634444888999*********************************6644.8****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +l Kp+ +eel + Achn173411 135 ACNYLIKPIREEELKN 150 ***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	6.26E-33	36	166	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	1.3E-39	36	174	No hit	No description
SMART	SM00448	4.1E-28	37	152	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	40.112	38	156	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	2.4E-21	39	150	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	2.33E-24	40	155	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-7	224	249	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence Send to blast
MAALQKLPQL CASMAANEPS STCKSEVVVS DQFPAGLRVL VVDDDVTCLR ILEQMLRRCM 60 YHVLAVTTCS EATVALNLLR EKRGCFDVVL SDVYMPDMDG FKLLEHVGLE MDLPVIMMSA 120 DGRTSAVMRG IRHGACNYLI KPIREEELKN IWQHVVRKRW NENKEHEHSG SLDDNDWHKR 180 GNDDTEFASS VNEGAEGLLK TQKKRRDAKE EDDGDLENDD PATAKKPRVV WSVELHQQFV 240 SAVSQLGIDM FFGIERCVDF EKFRLYLKRL SGVAQQQGGM PSSYCGSVEQ NGKPGSLGRF 300 DIPALAASGQ IPPQTLAALH AELLGQPNGN LVLPGMDQPL LQASLQGPKG ISVDHGVAYG 360 HPLVRCSTNI SKQFPLAIVT ADDVHSGLGA WPSNSPGPVG PGSNLSGLGV QSGNILMGML 420 HNQQQQPHLP PQQQKQAVQP EPSRLINVQP SCLVVPSQSS ASFQAGKNSV SINQNCSFNI 480 SSSMDYSVLS SQSNNSSFGI AQIMDGDPKT ASVLNGYSGP GSVSPSMSSC SINAENSANR 540 QLQNSTVASS AARQSPRLAP NMCDIQGSYN TNSGHVVDQG PLRNLGFVGK GTSIPSRFAV 600 DEPKSPMSNL NYGNGKIYGE NNGNKVKQEP SMDFIESAKV GIPILQNFSS NDLMSVFSE*

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence Send to blast

MAALQKLPQL CASMAANEPS STCKSEVVVS DQFPAGLRVL VVDDDVTCLR ILEQMLRRCM  60
YHVLAVTTCS EATVALNLLR EKRGCFDVVL SDVYMPDMDG FKLLEHVGLE MDLPVIMMSA  120
DGRTSAVMRG IRHGACNYLI KPIREEELKN IWQHVVRKRW NENKEHEHSG SLDDNDWHKR  180
GNDDTEFASS VNEGAEGLLK TQKKRRDAKE EDDGDLENDD PATAKKPRVV WSVELHQQFV  240
SAVSQLGIDM FFGIERCVDF EKFRLYLKRL SGVAQQQGGM PSSYCGSVEQ NGKPGSLGRF  300
DIPALAASGQ IPPQTLAALH AELLGQPNGN LVLPGMDQPL LQASLQGPKG ISVDHGVAYG  360
HPLVRCSTNI SKQFPLAIVT ADDVHSGLGA WPSNSPGPVG PGSNLSGLGV QSGNILMGML  420
HNQQQQPHLP PQQQKQAVQP EPSRLINVQP SCLVVPSQSS ASFQAGKNSV SINQNCSFNI  480
SSSMDYSVLS SQSNNSSFGI AQIMDGDPKT ASVLNGYSGP GSVSPSMSSC SINAENSANR  540
QLQNSTVASS AARQSPRLAP NMCDIQGSYN TNSGHVVDQG PLRNLGFVGK GTSIPSRFAV  600
DEPKSPMSNL NYGNGKIYGE NNGNKVKQEP SMDFIESAKV GIPILQNFSS NDLMSVFSE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010651276.1	0.0	PREDICTED: two-component response regulator ORR21 isoform X1
Swissprot	Q8H7S7	1e-132	ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBL	A0A2R6PAT1	0.0	A0A2R6PAT1_ACTCH; Two-component response regulator
STRING	VIT_01s0011g05830.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7749	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-98	response regulator 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]