PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn167241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HSF | ||||||||
Protein Properties | Length: 394aa MW: 45097.8 Da PI: 4.665 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.8 | 5.4e-36 | 71 | 163 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Flkk+++++ed+e++++isws++++sfvv+d++++++++Lpk+Fkh+nf+SF+RQLn+YgFkk+++++ weF+++ F++gk++ll++ik Achn167241 71 FLKKIFQMVEDPETDKIISWSDSQKSFVVWDHHQLSSSILPKHFKHNNFSSFIRQLNTYGFKKIDSDR---------WEFANEGFQRGKEHLLKNIK 158 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ Achn167241 159 RRKHN 163 **975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 4.73E-35 | 67 | 160 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.7E-57 | 67 | 160 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.1E-38 | 67 | 160 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.3E-32 | 71 | 160 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 71 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 109 | 121 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 110 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-18 | 122 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
METLTIKQEK IVVIDDAGDG EGSLMEEKKS MELVEVKEEP VIDLLDDDYR VGNCSIPKPM 60 EGLHETGPPP FLKKIFQMVE DPETDKIISW SDSQKSFVVW DHHQLSSSIL PKHFKHNNFS 120 SFIRQLNTYG FKKIDSDRWE FANEGFQRGK EHLLKNIKRR KHNSQNLLQQ RAIMRPSPDT 180 AQSGTETDLE KLRSDGNKIK MEILKLKQQQ ESTDNHLATV MDRIKNTESK QQQMFVFLAK 240 VFGSPVFLSQ FLQLLRQKKE LCIGQIAKKR RLEAPRCNEK SVDDQNENER SQNQEDLATI 300 ESDVQPLFCA SVDDEGSPST EKGNATPESV STDWNSEGFI MWQKLLDDEL IFEDEAGFGQ 360 DQSKIVLELE NLIKSPDWIG EMGDLDEQAS VLY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-25 | 62 | 160 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-25 | 62 | 160 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-25 | 62 | 160 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 159 | LKNIKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028060152.1 | 1e-137 | heat shock factor protein HSF30-like | ||||
TrEMBL | A0A2R6QUS5 | 0.0 | A0A2R6QUS5_ACTCH; Heat shock factor protein | ||||
STRING | XP_009606363.1 | 1e-110 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5681 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 6e-83 | heat shock transcription factor A2 |