PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn167241
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 394aa    MW: 45097.8 Da    PI: 4.665
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn167241genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.4e-36711632103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Flkk+++++ed+e++++isws++++sfvv+d++++++++Lpk+Fkh+nf+SF+RQLn+YgFkk+++++         weF+++ F++gk++ll++ik
    Achn167241  71 FLKKIFQMVEDPETDKIISWSDSQKSFVVWDHHQLSSSILPKHFKHNNFSSFIRQLNTYGFKKIDSDR---------WEFANEGFQRGKEHLLKNIK 158
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    Achn167241 159 RRKHN 163
                   **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.73E-3567160IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.7E-5767160IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-3867160IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.3E-3271160IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187194IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-18109121IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340110134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-18122134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
METLTIKQEK IVVIDDAGDG EGSLMEEKKS MELVEVKEEP VIDLLDDDYR VGNCSIPKPM  60
EGLHETGPPP FLKKIFQMVE DPETDKIISW SDSQKSFVVW DHHQLSSSIL PKHFKHNNFS  120
SFIRQLNTYG FKKIDSDRWE FANEGFQRGK EHLLKNIKRR KHNSQNLLQQ RAIMRPSPDT  180
AQSGTETDLE KLRSDGNKIK MEILKLKQQQ ESTDNHLATV MDRIKNTESK QQQMFVFLAK  240
VFGSPVFLSQ FLQLLRQKKE LCIGQIAKKR RLEAPRCNEK SVDDQNENER SQNQEDLATI  300
ESDVQPLFCA SVDDEGSPST EKGNATPESV STDWNSEGFI MWQKLLDDEL IFEDEAGFGQ  360
DQSKIVLELE NLIKSPDWIG EMGDLDEQAS VLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-256216017129Heat shock factor protein 1
5d5v_B1e-256216017129Heat shock factor protein 1
5d5v_D1e-256216017129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159LKNIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028060152.11e-137heat shock factor protein HSF30-like
TrEMBLA0A2R6QUS50.0A0A2R6QUS5_ACTCH; Heat shock factor protein
STRINGXP_009606363.11e-110(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-83heat shock transcription factor A2