PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn163771
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 316aa    MW: 35481.1 Da    PI: 8.3844
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn163771genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1744.5e-54151421128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeelvv+yLkkkv++ +l++  +i+e+d+yk++Pw+Lp k++ +e+ewyfFs+r++ky++g r++ra++sgyWkatg+dk+vl++ +++
  Achn163771  15 LPPGFRFHPTDEELVVHYLKKKVASAPLPV-AIIAEIDLYKFDPWELPDKATFGEQEWYFFSPRNRKYPNGARPKRAATSGYWKATGTDKPVLTSsGNQ 112
                 79****************************.88***************8888999*************************************9986888 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +vg+kk Lvfy+g+ pkg+kt+W+mheyr+
  Achn163771 113 KVGVKKALVFYRGKPPKGVKTNWIMHEYRI 142
                 8***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-656178IPR003441NAC domain
PROSITE profilePS5100562.41115177IPR003441NAC domain
PfamPF023653.5E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MESPDSSVGL QQPILPPGFR FHPTDEELVV HYLKKKVASA PLPVAIIAEI DLYKFDPWEL  60
PDKATFGEQE WYFFSPRNRK YPNGARPKRA ATSGYWKATG TDKPVLTSSG NQKVGVKKAL  120
VFYRGKPPKG VKTNWIMHEY RIIDNEAKSK QPPGYDAGHN KGSLRLDDWV LCRIYKKNNP  180
PRTIDDERDD SMTNLRSTIF PIPQNHTPST KPISYTPIPL LDHHLFDEML SHSGMDTAAS  240
LSHLNRMLPP LYWGDEGEAS KRLQEGTSDE NVARNHESDS SIASLLRQMP QTAMGPIGDG  300
GFGIPYSHPS LNWYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-731017912167NO APICAL MERISTEM PROTEIN
1ut4_B3e-731017912167NO APICAL MERISTEM PROTEIN
1ut7_A3e-731017912167NO APICAL MERISTEM PROTEIN
1ut7_B3e-731017912167NO APICAL MERISTEM PROTEIN
3swm_A4e-731017915170NAC domain-containing protein 19
3swm_B4e-731017915170NAC domain-containing protein 19
3swm_C4e-731017915170NAC domain-containing protein 19
3swm_D4e-731017915170NAC domain-containing protein 19
3swp_A4e-731017915170NAC domain-containing protein 19
3swp_B4e-731017915170NAC domain-containing protein 19
3swp_C4e-731017915170NAC domain-containing protein 19
3swp_D4e-731017915170NAC domain-containing protein 19
4dul_A3e-731017912167NAC domain-containing protein 19
4dul_B3e-731017912167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3190510.0KF319051.1 Actinidia chinensis NAC protein 2 (NAC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028055946.11e-139NAC transcription factor 56-like
SwissprotQ9LD441e-103NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A075EAR80.0A0A075EAR8_ACTCH; NAC protein 2
STRINGcassava4.1_022751m1e-132(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-105NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Nieuwenhuizen NJ, et al.
    Natural variation in monoterpene synthesis in kiwifruit: transcriptional regulation of terpene synthases by NAC and ETHYLENE-INSENSITIVE3-like transcription factors.
    Plant Physiol., 2015. 167(4): p. 1243-58
    [PMID:25649633]