PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn163771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 316aa MW: 35481.1 Da PI: 8.3844 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174 | 4.5e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeelvv+yLkkkv++ +l++ +i+e+d+yk++Pw+Lp k++ +e+ewyfFs+r++ky++g r++ra++sgyWkatg+dk+vl++ +++ Achn163771 15 LPPGFRFHPTDEELVVHYLKKKVASAPLPV-AIIAEIDLYKFDPWELPDKATFGEQEWYFFSPRNRKYPNGARPKRAATSGYWKATGTDKPVLTSsGNQ 112 79****************************.88***************8888999*************************************9986888 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfy+g+ pkg+kt+W+mheyr+ Achn163771 113 KVGVKKALVFYRGKPPKGVKTNWIMHEYRI 142 8***************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-65 | 6 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.411 | 15 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 316 aa Download sequence Send to blast |
MESPDSSVGL QQPILPPGFR FHPTDEELVV HYLKKKVASA PLPVAIIAEI DLYKFDPWEL 60 PDKATFGEQE WYFFSPRNRK YPNGARPKRA ATSGYWKATG TDKPVLTSSG NQKVGVKKAL 120 VFYRGKPPKG VKTNWIMHEY RIIDNEAKSK QPPGYDAGHN KGSLRLDDWV LCRIYKKNNP 180 PRTIDDERDD SMTNLRSTIF PIPQNHTPST KPISYTPIPL LDHHLFDEML SHSGMDTAAS 240 LSHLNRMLPP LYWGDEGEAS KRLQEGTSDE NVARNHESDS SIASLLRQMP QTAMGPIGDG 300 GFGIPYSHPS LNWYP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-73 | 10 | 179 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-73 | 10 | 179 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-73 | 10 | 179 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-73 | 10 | 179 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-73 | 10 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-73 | 10 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-73 | 10 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-73 | 10 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-73 | 10 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-73 | 10 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-73 | 10 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-73 | 10 | 179 | 15 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-73 | 10 | 179 | 12 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-73 | 10 | 179 | 12 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF319051 | 0.0 | KF319051.1 Actinidia chinensis NAC protein 2 (NAC2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028055946.1 | 1e-139 | NAC transcription factor 56-like | ||||
Swissprot | Q9LD44 | 1e-103 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A075EAR8 | 0.0 | A0A075EAR8_ACTCH; NAC protein 2 | ||||
STRING | cassava4.1_022751m | 1e-132 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1814 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-105 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|