PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn123451 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 173aa MW: 20044.8 Da PI: 6.9115 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.7e-05 | 116 | 139 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++Cp C k+F+r n+++H ++ H Achn123451 116 FSCPLCFKTFNRYNNMQTHYKRkH 139 89*******************999 PP | |||||||
2 | zf-C2H2 | 16.2 | 2.9e-05 | 144 | 166 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +Cgk F + + ++H +++ Achn123451 144 YMCRKCGKAFAVRGDWRTHEKNC 166 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.59E-11 | 112 | 162 | No hit | No description |
SMART | SM00355 | 0.005 | 116 | 139 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.5E-6 | 116 | 140 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13894 | 6.5E-4 | 116 | 139 | No hit | No description |
PROSITE profile | PS50157 | 10.554 | 116 | 143 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 118 | 139 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-6 | 141 | 164 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 40 | 144 | 164 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.995 | 144 | 164 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
MYSNNNNLYS SASPPLKEAL PLLNLSPTRP NQDQTMEVEE LKKEKEQRET VTVSLHLGLP 60 NPTSDDQMSR LEMMRDKEEE EEEEEEEGVS VVVSPLNKGQ YWIPTPTQIL MGPTQFSCPL 120 CFKTFNRYNN MQTHYKRKHG IKPYMCRKCG KAFAVRGDWR THEKNCGKLW YP* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020583327.1 | 3e-57 | zinc finger protein WIP2-like | ||||
Refseq | XP_023751483.1 | 5e-57 | zinc finger protein WIP2-like | ||||
Swissprot | Q8W030 | 2e-41 | ZWIP4_ARATH; Zinc finger protein WIP4 | ||||
TrEMBL | A0A2R6P861 | 5e-80 | A0A2R6P861_ACTCH; Zinc finger protein | ||||
STRING | XP_010031820.1 | 7e-54 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA462 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57670.1 | 5e-35 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|