PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn117711

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 855aa MW: 95832 Da PI: 10.0908

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn117711	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	45	81	2	40
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 +rW++eE +++a +++G + W+++a + R+ +++ Achn117711 45 LRWSEEELGCFYEAYRKYGQD-WEKVATLVR-DRSVEMV 81 69***************99.******9.9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0069	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-6	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	6.00E-5	46	81	No hit	No description
SuperFamily	SSF46689	8.22E-9	46	92	IPR009057	Homeodomain-like
Pfam	PF06584	3.0E-32	560	660	IPR033471	DIRP domain
SMART	SM01135	3.8E-56	560	661	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence Send to blast
MAPTRKSRTV NKRFSYVNEV SSSKDGENAK KSLQRKRKLS DMLGLRWSEE ELGCFYEAYR 60 KYGQDWEKVA TLVRDRSVEM VEALYVMNKA YLSLPEGTAS VVGLIAMMTD HYCNLGGSDS 120 EQDSNDRTEA SRKSQKCGRG TFRPNTSVGS DGHFLLHSQP VASSYGFLSL PKKRRSLDKA 180 FFFSSFVRIK VMRLNYGKVG LHFATGSRPR VVGKRTPRFP VSYSYEKVNG EKFFSPTRQS 240 LKLKPDANDD EVAHEVALAL AEASQKGGSP QVSQTPNRRT RNIMSSPNRN VERMRAELEL 300 TNPNLGNEMD ENGFKGSMGS MEADNGDFAD DRNYLIETKV VGPSELRKQR RLHDKKLEID 360 DSGYGHLDDI REACSGTEGG QNLGAFSEKL DFEVANRKLA RSSSQVSRKK SKKALFGKDE 420 GSPFDALQTL ADLSLMMPTT IIEDESSVQV KEEEDDLVHM YGSLETLPAS HQRNRLKSSG 480 VKAKGNQLRF GTSSIKTSKL RKSLIINVSA IPEEKEEPQQ STAILPGMKQ KMLTSKVRKD 540 KLSNSLSNNH LRRWCAFEWF YSAIDYPWFA KREFVEYLNH VGMGHVPRLT RVEWGVIKSS 600 LGKPRRFSKQ FLKEEKEKLN HYRDSVRTHY TELRAGTREG LPTDLAKPLS VGQRVMAIHP 660 RTKQIHDGNV LTVDHSRCRV QFDRTELGVE FVQGATTDPN SQAKIGTKET ATNQQAPNFQ 720 PYILAQIQGK QADVQALAEL TRALDKKAVD FRFRAVALVF LLSPLSLSIL VSHLSVDIPS 780 LCSLFLYHFR KASIIPTAIT MPITVGTVAS KDITRIAHPM SCHSSPIATI QRSPVTTQIS 840 KRSHIDCTTI IIAP*

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence Send to blast

MAPTRKSRTV NKRFSYVNEV SSSKDGENAK KSLQRKRKLS DMLGLRWSEE ELGCFYEAYR  60
KYGQDWEKVA TLVRDRSVEM VEALYVMNKA YLSLPEGTAS VVGLIAMMTD HYCNLGGSDS  120
EQDSNDRTEA SRKSQKCGRG TFRPNTSVGS DGHFLLHSQP VASSYGFLSL PKKRRSLDKA  180
FFFSSFVRIK VMRLNYGKVG LHFATGSRPR VVGKRTPRFP VSYSYEKVNG EKFFSPTRQS  240
LKLKPDANDD EVAHEVALAL AEASQKGGSP QVSQTPNRRT RNIMSSPNRN VERMRAELEL  300
TNPNLGNEMD ENGFKGSMGS MEADNGDFAD DRNYLIETKV VGPSELRKQR RLHDKKLEID  360
DSGYGHLDDI REACSGTEGG QNLGAFSEKL DFEVANRKLA RSSSQVSRKK SKKALFGKDE  420
GSPFDALQTL ADLSLMMPTT IIEDESSVQV KEEEDDLVHM YGSLETLPAS HQRNRLKSSG  480
VKAKGNQLRF GTSSIKTSKL RKSLIINVSA IPEEKEEPQQ STAILPGMKQ KMLTSKVRKD  540
KLSNSLSNNH LRRWCAFEWF YSAIDYPWFA KREFVEYLNH VGMGHVPRLT RVEWGVIKSS  600
LGKPRRFSKQ FLKEEKEKLN HYRDSVRTHY TELRAGTREG LPTDLAKPLS VGQRVMAIHP  660
RTKQIHDGNV LTVDHSRCRV QFDRTELGVE FVQGATTDPN SQAKIGTKET ATNQQAPNFQ  720
PYILAQIQGK QADVQALAEL TRALDKKAVD FRFRAVALVF LLSPLSLSIL VSHLSVDIPS  780
LCSLFLYHFR KASIIPTAIT MPITVGTVAS KDITRIAHPM SCHSSPIATI QRSPVTTQIS  840
KRSHIDCTTI IIAP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028104048.1	0.0	protein ALWAYS EARLY 3
Refseq	XP_028104049.1	0.0	protein ALWAYS EARLY 3
Swissprot	Q6A332	1e-104	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A2R6PK49	0.0	A0A2R6PK49_ACTCH; Protein ALWAYS EARLY like
STRING	XP_002516893.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	5e-92	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]