PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn103241

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

CAMTA

Protein Properties

Length: 757aa MW: 85741.1 Da PI: 6.7911

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn103241	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	160.6	2.9e-50	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 +e k+rwl+++ei+a+L n++ ++++ ++ + pksg+++ ++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ ptf rrcyw Achn103241 30 EEaKARWLRPNEIHAMLCNYKCFNVAVKPVNLPKSGTIVWFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDIPTFVRRCYW 128 45599******************************************************************************************** PP CG-1 101 lLeeelekivlvhylevk 118 lL+++le+ivlvhy+e++ Achn103241 129 LLDKTLEHIVLVHYRETQ 146 *************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.351	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.4E-73	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.6E-44	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.12E-11	354	426	IPR014756	Immunoglobulin E-set
CDD	cd00204	6.60E-10	437	504	No hit	No description
SuperFamily	SSF48403	3.58E-11	438	508	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.6E-12	440	508	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	11.453	445	477	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	2.6E-6	445	474	IPR002110	Ankyrin repeat
Pfam	PF00023	1.9E-5	445	476	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.487	445	477	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.22E-5	557	659	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	21	608	630	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.62	609	638	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.1	631	653	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.011	632	656	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.013	636	653	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	25	711	733	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.133	713	741	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence Send to blast
MENIVPGRLE GWEIHGFRTM EDLDFGNILE EAKARWLRPN EIHAMLCNYK CFNVAVKPVN 60 LPKSGTIVWF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDIP 120 TFVRRCYWLL DKTLEHIVLV HYRETQELQG SPVTPVYSNS NSGLSDPSAS WILSEETESG 180 SDPAYYTAGK VQLEPGDNLS FRNHEMTLHE INTLEWEELL VPNDPKLSAP EQGKTSCFEQ 240 QNEFGTNGFP SNVTILSGNK LPTKDSFRSL SEAVTQSNYI SNFLRKDPQL VTVSTGDSSD 300 ILGKDALQTQ DSFGKWMNYI MTDTPESLDD SNVESSNSTG HGSSLSPMMD HLQSPILITG 360 YFNEGPPHLE KSNIYCVCGD ACCPVEIVQS GVFRCLVSPH THGYVNLYLS FDDRIPISQV 420 LTFEYRIPLM CDPIISVDDK SKDKHGWTAL HWAAYCGREK MVAALLSAGA KPNLVTDPNS 480 ENPGGCIAAD LASKCGYDGL AAYLAEKALV EHFKDMTIAG NVSGSLQTAS PELVDPRTLN 540 EEELFLKDTL AAYRTAADAA ARIQAAFREQ SFKLRTKAVE ASSPEDEVRN IIAAMKIQHA 600 FRKFETRKKM AAAARIQHRF RAWKIRREFL NMKRQTIKIQ AVFRGLQVRR QYQKIVWSVG 660 VLEKAILRWR LKRRGFRGLQ VSPDEAVVID PKQESDVEDF FRASRNQAEE RVERSVVRVQ 720 ALFRSKRAQQ EYQRMKLAYN EAMLEYDGIV TSDDDM*

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence Send to blast

MENIVPGRLE GWEIHGFRTM EDLDFGNILE EAKARWLRPN EIHAMLCNYK CFNVAVKPVN  60
LPKSGTIVWF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDIP  120
TFVRRCYWLL DKTLEHIVLV HYRETQELQG SPVTPVYSNS NSGLSDPSAS WILSEETESG  180
SDPAYYTAGK VQLEPGDNLS FRNHEMTLHE INTLEWEELL VPNDPKLSAP EQGKTSCFEQ  240
QNEFGTNGFP SNVTILSGNK LPTKDSFRSL SEAVTQSNYI SNFLRKDPQL VTVSTGDSSD  300
ILGKDALQTQ DSFGKWMNYI MTDTPESLDD SNVESSNSTG HGSSLSPMMD HLQSPILITG  360
YFNEGPPHLE KSNIYCVCGD ACCPVEIVQS GVFRCLVSPH THGYVNLYLS FDDRIPISQV  420
LTFEYRIPLM CDPIISVDDK SKDKHGWTAL HWAAYCGREK MVAALLSAGA KPNLVTDPNS  480
ENPGGCIAAD LASKCGYDGL AAYLAEKALV EHFKDMTIAG NVSGSLQTAS PELVDPRTLN  540
EEELFLKDTL AAYRTAADAA ARIQAAFREQ SFKLRTKAVE ASSPEDEVRN IIAAMKIQHA  600
FRKFETRKKM AAAARIQHRF RAWKIRREFL NMKRQTIKIQ AVFRGLQVRR QYQKIVWSVG  660
VLEKAILRWR LKRRGFRGLQ VSPDEAVVID PKQESDVEDF FRASRNQAEE RVERSVVRVQ  720
ALFRSKRAQQ EYQRMKLAYN EAMLEYDGIV TSDDDM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028075463.1	0.0	calmodulin-binding transcription activator 5-like isoform X2
Swissprot	O23463	1e-134	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2R6PJM4	0.0	A0A2R6PJM4_ACTCH; Calmodulin-binding transcription activator 5 like
STRING	Lus10041126	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	1e-124	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]