PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn103241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | CAMTA | ||||||||
Protein Properties | Length: 757aa MW: 85741.1 Da PI: 6.7911 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 160.6 | 2.9e-50 | 30 | 146 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 +e k+rwl+++ei+a+L n++ ++++ ++ + pksg+++ ++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ ptf rrcyw Achn103241 30 EEaKARWLRPNEIHAMLCNYKCFNVAVKPVNLPKSGTIVWFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDIPTFVRRCYW 128 45599********************************************************************************************** PP CG-1 101 lLeeelekivlvhylevk 118 lL+++le+ivlvhy+e++ Achn103241 129 LLDKTLEHIVLVHYRETQ 146 ***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 75.351 | 25 | 151 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.4E-73 | 28 | 146 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.6E-44 | 31 | 144 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 1.12E-11 | 354 | 426 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 6.60E-10 | 437 | 504 | No hit | No description |
SuperFamily | SSF48403 | 3.58E-11 | 438 | 508 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.6E-12 | 440 | 508 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 11.453 | 445 | 477 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 2.6E-6 | 445 | 474 | IPR002110 | Ankyrin repeat |
Pfam | PF00023 | 1.9E-5 | 445 | 476 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.487 | 445 | 477 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 1.22E-5 | 557 | 659 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 21 | 608 | 630 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.62 | 609 | 638 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.1 | 631 | 653 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.011 | 632 | 656 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.013 | 636 | 653 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 25 | 711 | 733 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.133 | 713 | 741 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 757 aa Download sequence Send to blast |
MENIVPGRLE GWEIHGFRTM EDLDFGNILE EAKARWLRPN EIHAMLCNYK CFNVAVKPVN 60 LPKSGTIVWF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDIP 120 TFVRRCYWLL DKTLEHIVLV HYRETQELQG SPVTPVYSNS NSGLSDPSAS WILSEETESG 180 SDPAYYTAGK VQLEPGDNLS FRNHEMTLHE INTLEWEELL VPNDPKLSAP EQGKTSCFEQ 240 QNEFGTNGFP SNVTILSGNK LPTKDSFRSL SEAVTQSNYI SNFLRKDPQL VTVSTGDSSD 300 ILGKDALQTQ DSFGKWMNYI MTDTPESLDD SNVESSNSTG HGSSLSPMMD HLQSPILITG 360 YFNEGPPHLE KSNIYCVCGD ACCPVEIVQS GVFRCLVSPH THGYVNLYLS FDDRIPISQV 420 LTFEYRIPLM CDPIISVDDK SKDKHGWTAL HWAAYCGREK MVAALLSAGA KPNLVTDPNS 480 ENPGGCIAAD LASKCGYDGL AAYLAEKALV EHFKDMTIAG NVSGSLQTAS PELVDPRTLN 540 EEELFLKDTL AAYRTAADAA ARIQAAFREQ SFKLRTKAVE ASSPEDEVRN IIAAMKIQHA 600 FRKFETRKKM AAAARIQHRF RAWKIRREFL NMKRQTIKIQ AVFRGLQVRR QYQKIVWSVG 660 VLEKAILRWR LKRRGFRGLQ VSPDEAVVID PKQESDVEDF FRASRNQAEE RVERSVVRVQ 720 ALFRSKRAQQ EYQRMKLAYN EAMLEYDGIV TSDDDM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028075463.1 | 0.0 | calmodulin-binding transcription activator 5-like isoform X2 | ||||
Swissprot | O23463 | 1e-134 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A2R6PJM4 | 0.0 | A0A2R6PJM4_ACTCH; Calmodulin-binding transcription activator 5 like | ||||
STRING | Lus10041126 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4565 | 22 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 1e-124 | calmodulin binding;transcription regulators |
Publications ? help Back to Top | |||
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