PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn088601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | AP2 | ||||||||
Protein Properties | Length: 312aa MW: 35437.7 Da PI: 10.0628 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 25.4 | 3.6e-08 | 47 | 99 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkk 52 s+++GV+ +++gr++A+++d s+n +rk+ g f+ +e Aa+a++ a+ + Achn088601 47 SRFRGVS--RWTGRYEAHLWDkGSWNVitQRKKGKQGAFDEEESAARAYDLAAIN 99 789***6..48**********888877875544444****************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.73E-6 | 47 | 99 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-6 | 48 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-4 | 48 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.982 | 48 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MEMITLVKSE VSPVRRRLCE MERDQKQPQQ LLVDKSSATN TTVKRSSRFR GVSRWTGRYE 60 AHLWDKGSWN VITQRKKGKQ GAFDEEESAA RAYDLAAINH QVTDYEKKIE MMQNVTKEEY 120 LTSLRRSSGF SRGVSKYRGA ARSLSKTFFH IQDTRLNMES QPVNTLSDQI SSQEPEFTFR 180 SSPYTMGNYG KNPRKQEVLE TKITISPCKR SPSPTAIGLL LRSNMFRELV EKNSNVVDDN 240 SKQNDMKNKS HINGGDEFGR FFFNSIGSNP YECSSSSDKL PRLESREENA SALYNKAGKS 300 LWNGALNLPA N* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028099209.1 | 1e-101 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A2R6PBL7 | 0.0 | A0A2R6PBL7_ACTCH; AP2-like ethylene-responsive transcription factor | ||||
STRING | EOY02049 | 7e-78 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3440 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 1e-34 | AP2 family protein |