PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn088601
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 312aa    MW: 35437.7 Da    PI: 10.0628
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn088601genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.43.6e-084799152
         AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkk 52
                s+++GV+  +++gr++A+++d  s+n   +rk+   g f+ +e Aa+a++ a+ +
  Achn088601 47 SRFRGVS--RWTGRYEAHLWDkGSWNVitQRKKGKQGAFDEEESAARAYDLAAIN 99
                789***6..48**********888877875544444****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.73E-64799IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-64899IPR001471AP2/ERF domain
SMARTSM003801.8E-448107IPR001471AP2/ERF domain
PROSITE profilePS5103210.98248116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEMITLVKSE VSPVRRRLCE MERDQKQPQQ LLVDKSSATN TTVKRSSRFR GVSRWTGRYE  60
AHLWDKGSWN VITQRKKGKQ GAFDEEESAA RAYDLAAINH QVTDYEKKIE MMQNVTKEEY  120
LTSLRRSSGF SRGVSKYRGA ARSLSKTFFH IQDTRLNMES QPVNTLSDQI SSQEPEFTFR  180
SSPYTMGNYG KNPRKQEVLE TKITISPCKR SPSPTAIGLL LRSNMFRELV EKNSNVVDDN  240
SKQNDMKNKS HINGGDEFGR FFFNSIGSNP YECSSSSDKL PRLESREENA SALYNKAGKS  300
LWNGALNLPA N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028099209.11e-101AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2R6PBL70.0A0A2R6PBL7_ACTCH; AP2-like ethylene-responsive transcription factor
STRINGEOY020497e-78(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34402145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-34AP2 family protein