PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn068681
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 391aa    MW: 45065.5 Da    PI: 7.2725
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn068681genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.93e-12254279126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 y   +C+++ +tG+C yGd+CkF+H+
  Achn068681 254 YQPDICKDYKETGYCGYGDSCKFMHD 279
                 66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.09E-9251284IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7253280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878253281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-12254284IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-10254279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.0E-13322373IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.3E-8331374No hitNo description
SuperFamilySSF578501.03E-12331374No hitNo description
PROSITE profilePS5008910.409332370IPR001841Zinc finger, RING-type
SMARTSM001841.8E-4332369IPR001841Zinc finger, RING-type
CDDcd001622.87E-7332373No hitNo description
PROSITE patternPS005180347356IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MEMEGGVGWE SFGSKILIIS QYIKINRRVF EFWHFDTHIS GSIFWYCQLH WQQRQDSEIE  60
IWIIGGCYSP CCNTTNSKFC NFFRKPSKNK NIRKRTFDEN ENEDEDSKTE FSQIHNKKKK  120
TQPDNKLNFS TGPSKRSVSS ESNVESITPM FQFESSKEIQ VQDDGRATAT LETETEFSKD  180
ARAIRERVLK QAEEALKRKG KNPADEKLYK GIHGYTDYKA GFRREQKVSA EKAGGSHGPL  240
RASAHIRVTA RFDYQPDICK DYKETGYCGY GDSCKFMHDR GDYKSGWQLE KEWDEAEKVR  300
KRNLALGGDD MDDEGAVDQS DEDDEDALPF ACFICRQPFV DPVVTKCKHY FCEHCALKHH  360
AKNKKCFVCN KPTDGIFNTA HEIKKKMVAE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-62155387105317RING finger protein 113A
5z58_M3e-62155387105317RING finger protein 113A
6ff4_t3e-62155387105317RING finger protein 113A
6ff7_t3e-62155387105317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028112176.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-160C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A068UR941e-179A0A068UR94_COFCA; Uncharacterized protein
STRINGXP_010103154.11e-178(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-162C3H family protein