PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn061231
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 467aa    MW: 52374.5 Da    PI: 8.1891
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn061231genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-13291335554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h + Er+RR+++N+ f+ Lr+llP+      +K +Ka++L+ ++eY+ sL
  Achn061231 291 HMISERKRREKLNENFQALRSLLPPE-----TKKDKASVLTGTTEYLASL 335
                 8899*********************9.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.224286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-16287353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-14288353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-11288340No hitNo description
PfamPF000102.4E-10291335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-12292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDGFYKEEMN SQPSSSSGSL SRKLFDEYTQ LVFPVQNGRV PGLAFKNNLP FMELKELDLQ  60
RLAFNQAQLQ FYREARIKTA VFMGCMAGEI ELGLSNDTQV NLEMEMEKLI PENFSKQAPL  120
LPNPTYQNRP SSSSSSLRSL SMDSPERPPF LFNIPSISYP PDPPKEAPIE QASRPISSTS  180
TIQLALNQIR NAPFPTPGIE DDAITKAMIA VLSSSPPPSS SSLSHHQPQQ NLPPNYPVSA  240
FKRYRSALAP SNPIRRPNML KRAITFFRSL SLMRTQDRVQ GSRPTTTQLH HMISERKRRE  300
KLNENFQALR SLLPPETKKD KASVLTGTTE YLASLKAQVA ELTRRNRILE AQLLSKKEAN  360
EGASEPSNDR IRVQVTPVDE STSESRIIDL QVIVRAECDL LDLVIRLMEF LKDAQNVSVT  420
SMEADTRMVE SNSINRMTFR LTIEGDGWDE SAFQEAVRRV VADVGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294299ERKRRE
2295300RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028092783.10.0putative transcription factor bHLH041
TrEMBLA0A2R6R4710.0A0A2R6R471_ACTCH; Transcription factor bHLH041 like
STRINGVIT_11s0016g02070.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-69bHLH family protein