PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn061231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 467aa MW: 52374.5 Da PI: 8.1891 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 5e-13 | 291 | 335 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N+ f+ Lr+llP+ +K +Ka++L+ ++eY+ sL Achn061231 291 HMISERKRREKLNENFQALRSLLPPE-----TKKDKASVLTGTTEYLASL 335 8899*********************9.....8***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.224 | 286 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-16 | 287 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-14 | 288 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.10E-11 | 288 | 340 | No hit | No description |
Pfam | PF00010 | 2.4E-10 | 291 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-12 | 292 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MDGFYKEEMN SQPSSSSGSL SRKLFDEYTQ LVFPVQNGRV PGLAFKNNLP FMELKELDLQ 60 RLAFNQAQLQ FYREARIKTA VFMGCMAGEI ELGLSNDTQV NLEMEMEKLI PENFSKQAPL 120 LPNPTYQNRP SSSSSSLRSL SMDSPERPPF LFNIPSISYP PDPPKEAPIE QASRPISSTS 180 TIQLALNQIR NAPFPTPGIE DDAITKAMIA VLSSSPPPSS SSLSHHQPQQ NLPPNYPVSA 240 FKRYRSALAP SNPIRRPNML KRAITFFRSL SLMRTQDRVQ GSRPTTTQLH HMISERKRRE 300 KLNENFQALR SLLPPETKKD KASVLTGTTE YLASLKAQVA ELTRRNRILE AQLLSKKEAN 360 EGASEPSNDR IRVQVTPVDE STSESRIIDL QVIVRAECDL LDLVIRLMEF LKDAQNVSVT 420 SMEADTRMVE SNSINRMTFR LTIEGDGWDE SAFQEAVRRV VADVGN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 294 | 299 | ERKRRE |
2 | 295 | 300 | RKRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028092783.1 | 0.0 | putative transcription factor bHLH041 | ||||
TrEMBL | A0A2R6R471 | 0.0 | A0A2R6R471_ACTCH; Transcription factor bHLH041 like | ||||
STRING | VIT_11s0016g02070.t01 | 1e-145 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4567 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 2e-69 | bHLH family protein |