PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn054961
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 343aa    MW: 37286.3 Da    PI: 5.064
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn054961genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-1981131155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr++  +g+WvAeIr+p   + r  r++lg+f ta eAa+a+++a+k+++g
  Achn054961  81 CNYRGVRQRT-WGKWVAEIREP---N-RgSRIWLGTFPTAPEAARAYDEAAKAMYG 131
                 56*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-1481131IPR001471AP2/ERF domain
CDDcd000183.45E-3381140No hitNo description
PROSITE profilePS5103222.31382139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-3182140IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2182139IPR016177DNA-binding domain
SMARTSM003801.1E-3582145IPR001471AP2/ERF domain
PRINTSPR003671.8E-108394IPR001471AP2/ERF domain
PRINTSPR003671.8E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGFLDQASNM VSVPLDHSRK RKSRSRRDGP NGIAETLAKW KEYNEKIESL DNGPKPARKT  60
PAKGSKKGCM KGKGGPQNSH CNYRGVRQRT WGKWVAEIRE PNRGSRIWLG TFPTAPEAAR  120
AYDEAAKAMY GPGARLNFAE GSSLTESSVQ SASLPTTSGS GSSTSSSYSE VKLHAPKANH  180
DDEDDELRID GNSSYAGNSV PLTAVKEEVN DEPVDFSGKG KQMELFEKPS LDDILQNFSL  240
EMLDAEELLG ILDTDYNMGP AHNSGKMGQS GDRSNFQGEK PLDLSSQLQN PEAKLLGSLN  300
HMEQAPPGVD CGLDFLKPGR EEDFNFALDD LGFFHLDSDL GL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1771138371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722SRKRKS
22027RKSRSRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8698540.0GQ869854.1 Actinidia deliciosa ethylene response factor 3 (ERF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028118168.11e-113dehydration-responsive element-binding protein 2C-like
TrEMBLA0A2R6RR550.0A0A2R6RR55_ACTCH; Dehydration-responsive element-binding protein like
STRINGXP_009594350.11e-96(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.15e-38ERF family protein