PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn043311
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 731aa    MW: 80188.9 Da    PI: 6.5965
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn043311genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-181775357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Achn043311 17 KYVRYTPEQVEALERVYSECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                6789*****************************************************97 PP
2START161.94.9e-511653722204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s ++sg a+r++g+v  ++   v+e+l+d++ W ++++  ++l vi +g  g+++ +++++
  Achn043311 165 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSPSCSGVAARVCGLVSLEPK-KVAEILKDRPSWFRDCRCLDVLSVIPTGsgGTIEITYMQT 262
                 68999*******************************99999*****************.8888888888****************************** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+s+l++  df+++Ry+ +l++g++vi+++S++s +  p+   ss +vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l++s+ + ++
  Achn043311 263 YAPSTLAAaCDFWTLRYTTSLEDGSLVICERSLTSSTGGPTgppSSCFVRAEMLPSGYLIRPCDGGGSIIHIVDHIDLDAWSVPEVLRPLYESSKILAQ 361
                 ************************************9999999999***************************************************** PP

                 HHHHHHTXXXX CS
       START 194 ktwvatlqrqc 204
                 k++ a+l++ +
  Achn043311 362 KMTIAALRHIR 372
                 ******99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-18475IPR009057Homeodomain-like
PROSITE profilePS5007115.8881276IPR001356Homeobox domain
SMARTSM003893.1E-151480IPR001356Homeobox domain
SuperFamilySSF466891.24E-161678IPR009057Homeodomain-like
CDDcd000861.04E-161777No hitNo description
PfamPF000462.8E-161775IPR001356Homeobox domain
CDDcd146869.11E-669108No hitNo description
PROSITE profilePS5084823.084155383IPR002913START domain
CDDcd088751.60E-69159375No hitNo description
Gene3DG3DSA:3.30.530.209.2E-22163369IPR023393START-like domain
SMARTSM002345.8E-47164374IPR002913START domain
SuperFamilySSF559615.36E-38165376No hitNo description
PfamPF018522.6E-48165372IPR002913START domain
PfamPF086701.3E-5688729IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MHKESSSGNK HQMDNSKYVR YTPEQVEALE RVYSECPKPS SMRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKESS RLQTVNRKLA AMNKLLMEEN DRLQKQVSQL VYENGYMSQQ  120
LHNVSSATTD TSCESVVMSG QHQQQNPTPQ HPQRDANNPA GLLAIAEETL AEFLSKATGT  180
AVDWVQMIGM KPGPDSIGIV AVSPSCSGVA ARVCGLVSLE PKKVAEILKD RPSWFRDCRC  240
LDVLSVIPTG SGGTIEITYM QTYAPSTLAA ACDFWTLRYT TSLEDGSLVI CERSLTSSTG  300
GPTGPPSSCF VRAEMLPSGY LIRPCDGGGS IIHIVDHIDL DAWSVPEVLR PLYESSKILA  360
QKMTIAALRH IRQIAQETSG EIQYGGGRQP AVLRTFSQRL CRGFNDAVNG FADDGWTIMD  420
SDDVEDVTIA INSSPNKFIG SQYNTLSMLP SFGGNVPPPL LVRFLRKHRS EWADYGVDAY  480
SAACLKASPY AVPRARPGGF SSSPVILPLA HTVEQEEFLE VVRLEGHAFS PEEIALSRDM  540
YLLQLCSGVD ENPAGACAQL VFAPIDESFA DDAPLLPSGF RVIPLDPKSD GPNATRTLDL  600
ASTLEVGRGG ARPAGEADLN SYNHRSVLTI AFQFTFENHF RDNVAAMAHQ YVRSVVSSVQ  660
RVAMAISPSQ LSSHLGPKQL PGSPEALTLA RRISRSYRIH TGGELLRVDA QEGDAVLKQL  720
WHHSDAIMSL *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281868.20.0PREDICTED: homeobox-leucine zipper protein HOX32
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2R6RG240.0A0A2R6RG24_ACTCH; Homeobox-leucine zipper protein
STRINGVIT_10s0003g04670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]