PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn005621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | WRKY | ||||||||
Protein Properties | Length: 289aa MW: 32353.4 Da PI: 7.745 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94 | 1e-29 | 149 | 207 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++prsYY+C+s gC ++k+v+rs++dp++++itY+ +H h+ Achn005621 149 SDMWAWRKYGQKPIKGSPYPRSYYKCSSLkGCLARKQVDRSQTDPEMFVITYTADHCHS 207 79*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.9E-30 | 134 | 209 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.871 | 143 | 209 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-25 | 146 | 209 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.7E-34 | 148 | 208 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.7E-24 | 150 | 206 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MLRRPTGLVV RCSYFLMSID HYFAGTGDAD LEAVVRGYNH PQTCFSPLIF QQDDHDFVLS 60 TFPDLFKTSS TLFDELEELY KPFYHQSLIS SSDSGSGGER EPEKVQETKE AFCGSTTSVA 120 AGALGVKQKR RKTQHKRVVT EVRADGLSSD MWAWRKYGQK PIKGSPYPRS YYKCSSLKGC 180 LARKQVDRSQ TDPEMFVITY TADHCHSQPT RRSSLAGTTR KKFSLSKTTA AANLSCAPIS 240 SSSSLSPPPK EEEQQMDQRS ELVMRDMVLG DEFFVGFDEL DYSGFSCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-17 | 136 | 210 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 1e-17 | 136 | 210 | 6 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028115579.1 | 3e-87 | probable WRKY transcription factor 29 | ||||
TrEMBL | A0A2R6QIZ6 | 0.0 | A0A2R6QIZ6_ACTCH; WRKY transcription factor | ||||
STRING | VIT_02s0025g00420.t01 | 2e-71 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5781 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 1e-58 | WRKY family protein |