PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn002551
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 126aa    MW: 14651 Da    PI: 9.9536
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn002551genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.89e-31252151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++g+lye+ss
  Achn002551  2 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSNKGRLYEFSS 52
                79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.62E-27160IPR002100Transcription factor, MADS-box
CDDcd002656.74E-34158No hitNo description
PROSITE profilePS5006629.03154IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-31153IPR002100Transcription factor, MADS-box
PfamPF003191.3E-26350IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-191631IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-193152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MKRIENATSR QVTFSKRRNG LLKKAFELSV LCDAEVALII FSNKGRLYEF SSSRFLGIWH  60
LQDSEYRPLS VFSMVIQDQL FKEKIKQLKE ECEKQSRLLS TTLQVVHREI SDVNTELFIG  120
RPPER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-15153860Myocyte-specific enhancer factor 2B
1tqe_Q2e-15153860Myocyte-specific enhancer factor 2B
1tqe_R2e-15153860Myocyte-specific enhancer factor 2B
1tqe_S2e-15153860Myocyte-specific enhancer factor 2B
6c9l_A2e-15153860Myocyte-specific enhancer factor 2B
6c9l_B2e-15153860Myocyte-specific enhancer factor 2B
6c9l_C2e-15153860Myocyte-specific enhancer factor 2B
6c9l_D2e-15153860Myocyte-specific enhancer factor 2B
6c9l_E2e-15153860Myocyte-specific enhancer factor 2B
6c9l_F2e-15153860Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP4071473e-84KP407147.1 Actinidia chinensis SOC1a (SOC1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0F7LFL39e-30A0A0F7LFL3_ACTCH; SOC1a
TrEMBLA0A2R6QK509e-30A0A2R6QK50_ACTCH; Agamous-like MADS-box protein
STRINGLus100067163e-32(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.11e-29AGAMOUS-like 14