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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Aan008801 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Artemisia
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Family | MYB_related | ||||||||||||
Protein Properties | Length: 205aa MW: 22829.7 Da PI: 4.5554 | ||||||||||||
Description | MYB_related family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.9 | 6.2e-10 | 23 | 62 | 2 | 40 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.kgRtlkqc 40 ++W t E++ll+ av+++G+++W++Ia+++ + + +q+ Aan008801 23 DAWGTSEELLLASAVNRYGTKNWDLIASEIKiRTASSNQI 62 58****************************9777777775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.56E-6 | 20 | 62 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-7 | 21 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-6 | 24 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-9 | 24 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.23E-8 | 24 | 77 | No hit | No description |
PROSITE profile | PS50090 | 6.156 | 25 | 77 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MAVDNTPSST AKSDHHHHAP PPDAWGTSEE LLLASAVNRY GTKNWDLIAS EIKIRTASSN 60 QIYFTPVHCQ QKYKELKRRF NDDNDDDVTD DVISIPWLDD LKKERIVWLQ NHLQNLDPRI 120 SSLQLTVKKL KEEREKPAEK AEPVAVVSSG TGEDESDRSV NGSNGNVETN EPEKSPVRTG 180 EEKPVGSEPV KSEPGGNESE EGDDX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021972256.1 | 9e-46 | uncharacterized protein LOC110867585 | ||||
TrEMBL | A0A2U1NP53 | 1e-116 | A0A2U1NP53_ARTAN; DNA-binding bromodomain-containing protein | ||||
STRING | Gorai.006G142400.1 | 3e-34 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44430.1 | 1e-17 | DNA-binding bromodomain-containing protein |