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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
AT1G32540.1 |
Common Name | LOL1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
LSD |
Protein Properties |
Length: 187aa MW: 20285.8 Da PI: 8.2877 |
Description |
lsd one like 1 |
Gene Model |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-LSD1 | 45.6 | 1.1e-14 | 70 | 94 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr+lL+YP GA+sV+Ca+C++V
AT1G32540.1 70 CSGCRNLLMYPVGATSVCCAVCNAV 94
************************9 PP
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2 | zf-LSD1 | 46.3 | 7.1e-15 | 109 | 133 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggC+tlL+Y rGA+sV+C++C+tV
AT1G32540.1 109 CGGCHTLLMYIRGATSVQCSCCHTV 133
************************9 PP
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3 | zf-LSD1 | 37.1 | 5.3e-12 | 147 | 171 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+C lL+Y +GA+sV+Ca+C++V
AT1G32540.1 147 CGNCMMLLMYQYGARSVKCAVCNFV 171
***********************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009814 | Biological Process | defense response, incompatible interaction |
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response |
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response |
GO:0045595 | Biological Process | regulation of cell differentiation |
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 187 aa
Download sequence Send
to blast |
MHTWKNQIFS DSQFVLLFMG KNCSIIFPEP HLFISHVFII HLNVLFLVKK INKNNLRFVG 60 STSGQSQLVC SGCRNLLMYP VGATSVCCAV CNAVTAVPPP GTEMAQLVCG GCHTLLMYIR 120 GATSVQCSCC HTVNLALEAN QVAHVNCGNC MMLLMYQYGA RSVKCAVCNF VTSVGGSTST 180 TDSKFNN
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Functional Description ? help
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Source |
Description |
TAIR | Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death. |
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY057675 | 0.0 | AY057675.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds. |
GenBank | AY116951 | 0.0 | AY116951.1 Arabidopsis thaliana At1g32540/T9G5_1 mRNA, complete cds. |
GenBank | AY349618 | 0.0 | AY349618.1 Arabidopsis thaliana LSD1-like (LOL1) mRNA, complete cds. |
Publications
? help Back to Top |
- Epple P,Mack AA,Morris VR,Dangl JL
Antagonistic control of oxidative stress-induced cell death in Arabidopsis by two related, plant-specific zinc finger proteins. Proc. Natl. Acad. Sci. U.S.A., 2003. 100(11): p. 6831-6 [PMID:12732715] - Dal Bosco C, et al.
Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. J. Biol. Chem., 2004. 279(2): p. 1060-9 [PMID:14576160] - Takemoto D,Hardham AR,Jones DA
Differences in cell death induction by Phytophthora Elicitins are determined by signal components downstream of MAP kinase kinase in different species of Nicotiana and cultivars of Brassica rapa and Raphanus sativus. Plant Physiol., 2005. 138(3): p. 1491-504 [PMID:15980203] - Larkindale J,Vierling E
Core genome responses involved in acclimation to high temperature. Plant Physiol., 2008. 146(2): p. 748-61 [PMID:18055584] - Ascencio-Ib
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. Plant Physiol., 2008. 148(1): p. 436-54 [PMID:18650403] - Yeh SH,Lin CS,Wu FH,Wang AY
Analysis of the expression of BohLOL1, which encodes an LSD1-like zinc finger protein in Bambusa oldhamii. Planta, 2011. 234(6): p. 1179-89 [PMID:21744093] - Arabidopsis Interactome Mapping Consortium
Evidence for network evolution in an Arabidopsis interactome map. Science, 2011. 333(6042): p. 601-7 [PMID:21798944] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Jin J, et al.
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors. Mol. Biol. Evol., 2015. 32(7): p. 1767-73 [PMID:25750178]
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