PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017326-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 294aa    MW: 33817.9 Da    PI: 10.0938
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017326-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.27.3e-1926115198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk+ +p++++k  +lv+p  f+++++g    + +++l++++g+ W+v+l  ++ +++ ++++GW +Fv +n L+ g+f++F +++++ f   v
  AHYPO_017326-RA  26 FFKIYLPEHNSK--QLVIPPAFISNFNGR--IPSKVILKNLQGKDWNVEL--EQDGNKLLMRNGWDRFVIDNSLELGEFLIFVYVSKTMF--IV 111
                      788886666655..59*******888766..5668***************..999999*************************9876666..99 PP

                      EEE- CS
               B3  95 kvfr 98 
                      k+f+
  AHYPO_017326-RA 112 KIFS 115
                      9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-2320119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-2420119IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-1824115No hitNo description
PROSITE profilePS5086314.38124117IPR003340B3 DNA binding domain
SMARTSM010191.3E-1826117IPR003340B3 DNA binding domain
PfamPF023624.5E-1726115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-7184275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-6184270IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.76189287IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MERPVKRRRG RPSLMESITQ HHRPEFFKIY LPEHNSKQLV IPPAFISNFN GRIPSKVILK  60
NLQGKDWNVE LEQDGNKLLM RNGWDRFVID NSLELGEFLI FVYVSKTMFI VKIFSINGCV  120
KKVSTTINEQ SYAKVKEEPK SDNESSPSTS SCKTSFERDV QHEQISDDKC EVKTNVVEGR  180
TTQSKPIQFT KVVDGRPYLS IPAEVFRLNN VKFPESKKEI LLGYGSEVSQ AGKLSQTTRR  240
RVQITYGWKA FQLKYNIAKG DECKFEVIVG NDMHIKEIVL LQIRSNARLI RCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-13171192104At1g16640
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
127RPVKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838094.11e-85putative B3 domain-containing protein Os03g0621600
RefseqXP_021847162.11e-85putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0K9S0M51e-83A0A0K9S0M5_SPIOL; Uncharacterized protein
STRINGXP_010674817.12e-47(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-20B3 family protein